Detailed information NTG0734515

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: P4831_RS10635
• Genome accession: NZ_CP120842
• Coordinates: 2091363..2092439 (+)
• Length: 358 a.a.
• NCBI ID: WP_010906242.1
• Uniprot ID: Q9CE70
• Organism: Lactococcus lactis strain ZFM559
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2086363..2097439

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P4831_RS10610	pgsA	2086523..2087095 (-)	573	WP_004254763.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
P4831_RS10615	-	2087136..2088032 (-)	897	WP_004254758.1	RodZ family helix-turn-helix domain-containing protein	-
P4831_RS10620	-	2088244..2089527 (-)	1284	WP_004254752.1	pitrilysin family protein	-
P4831_RS10625	-	2089517..2090803 (-)	1287	WP_023164564.1	pitrilysin family protein	-
P4831_RS10630	yaaA	2091001..2091363 (+)	363	WP_023164565.1	S4 domain-containing protein YaaA	-
P4831_RS10635	recF	2091363..2092439 (+)	1077	WP_010906242.1	DNA replication/repair protein RecF	Machinery gene
P4831_RS10640	-	2092526..2092894 (-)	369	WP_023164566.1	carboxymuconolactone decarboxylase family protein	-
P4831_RS10645	-	2092972..2093349 (+)	378	WP_010906243.1	MerR family transcriptional regulator	-
P4831_RS10650	-	2093362..2093712 (-)	351	Protein_2069	alpha/beta hydrolase	-
P4831_RS10655	galE	2093737..2094663 (-)	927	WP_277812674.1	UDP-glucose 4-epimerase GalE	-
P4831_RS10660	-	2094666..2097068 (-)	2403	WP_277812472.1	glycoside hydrolase family 2 TIM barrel-domain containing protein	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41356.23 Da
• Isoelectric Point: 6.8652

>NTDB_id=734515 P4831_RS10635 WP_010906242.1 2091363..2092439(+) (recF) [Lactococcus lactis strain ZFM559]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=734515 P4831_RS10635 WP_010906242.1 2091363..2092439(+) (recF) [Lactococcus lactis strain ZFM559]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCACCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCACAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

3D structure

• AlphaFold DB: Q9CE70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.207	0.447