Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   N8I74_RS09000 Genome accession   NZ_CP106753
Coordinates   1929892..1930692 (+) Length   266 a.a.
NCBI ID   WP_263126560.1    Uniprot ID   -
Organism   Chitiniphilus purpureus strain CD1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1924892..1935692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I74_RS08975 (N8I74_08975) - 1925430..1925636 (+) 207 WP_263126555.1 hypothetical protein -
  N8I74_RS08980 (N8I74_08980) - 1925667..1927037 (-) 1371 WP_263126556.1 C13 family peptidase -
  N8I74_RS08985 (N8I74_08985) - 1927111..1928046 (-) 936 WP_263126557.1 ZIP family metal transporter -
  N8I74_RS08990 (N8I74_08990) pgeF 1928108..1928860 (-) 753 WP_263126558.1 peptidoglycan editing factor PgeF -
  N8I74_RS08995 (N8I74_08995) rluD 1928847..1929893 (-) 1047 WP_263126559.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N8I74_RS09000 (N8I74_09000) comL 1929892..1930692 (+) 801 WP_263126560.1 outer membrane protein assembly factor BamD Machinery gene
  N8I74_RS09025 (N8I74_09025) - 1931778..1934207 (+) 2430 WP_263126561.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  N8I74_RS09030 (N8I74_09030) - 1934243..1934494 (+) 252 WP_263126562.1 acyl carrier protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30217.32 Da        Isoelectric Point: 8.5411

>NTDB_id=734473 N8I74_RS09000 WP_263126560.1 1929892..1930692(+) (comL) [Chitiniphilus purpureus strain CD1]
MNKILPRILAATIAAALIAGCAATPQEQDETRGWSAEKIYAEAKAEQISKNYDRSNKLLEKLEARYPYGRHAQQAILETA
YNNYKGQEPLLALSAIDRFIKQYPAHPSMDYAFYLRGLVHFNESQGFLSFLSKQDMSERDPQAARDSFESFSQLVTRFPD
SRYAADAQLRMGYLIGALADYELHVAKYYYKRGAYLAAANRGKHLLETYGNTKQVEPALGVMVLAYDKLGLTELRDDAKR
VLLKNYPDTKVLDPESLQGRAWWAPW

Nucleotide


Download         Length: 801 bp        

>NTDB_id=734473 N8I74_RS09000 WP_263126560.1 1929892..1930692(+) (comL) [Chitiniphilus purpureus strain CD1]
ATGAACAAGATTCTACCGCGAATCCTCGCGGCCACGATCGCCGCTGCCCTGATCGCGGGCTGCGCTGCCACTCCGCAGGA
GCAGGACGAAACGCGTGGCTGGTCGGCCGAAAAGATCTATGCCGAGGCCAAGGCCGAGCAGATCAGCAAGAACTACGATC
GTTCCAACAAGCTTTTGGAGAAGCTCGAAGCACGCTATCCCTACGGTCGCCATGCCCAGCAGGCGATCCTGGAAACCGCC
TACAACAATTACAAGGGCCAGGAGCCCTTGCTGGCGCTGTCGGCCATCGACCGCTTCATCAAGCAATACCCGGCCCATCC
CAGCATGGACTATGCGTTCTACCTGCGCGGGCTGGTGCATTTCAACGAATCACAGGGTTTTCTGTCGTTCCTGTCCAAGC
AGGACATGTCCGAGCGTGATCCGCAGGCCGCACGCGATTCGTTCGAGAGCTTCAGCCAACTGGTCACGCGCTTTCCGGAC
AGCCGCTACGCTGCCGATGCGCAACTGCGGATGGGCTACCTGATCGGCGCGCTGGCTGACTACGAGCTGCATGTCGCCAA
GTATTACTACAAGCGCGGCGCCTATCTGGCCGCGGCCAATCGCGGCAAGCATCTGTTGGAGACCTACGGCAATACCAAGC
AGGTGGAACCGGCGCTGGGGGTGATGGTGCTGGCGTACGACAAGCTTGGGCTCACCGAACTCAGGGACGATGCCAAGCGT
GTGCTGCTGAAGAACTACCCCGATACCAAGGTGCTCGACCCGGAGTCCCTCCAGGGACGCGCCTGGTGGGCGCCGTGGTA
G

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(36-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

49.071

100

0.496
  comL Neisseria gonorrhoeae MS11

48.162

100

0.492