Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   N8I82_RS02155 Genome accession   NZ_CP106751
Coordinates   411942..413726 (+) Length   594 a.a.
NCBI ID   WP_263090670.1    Uniprot ID   -
Organism   Granulicatella adiacens strain KHUD_009     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 406942..418726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I82_RS02140 (N8I82_02140) acpP 407408..407650 (+) 243 WP_049554341.1 acyl carrier protein -
  N8I82_RS02145 (N8I82_02145) - 407909..409702 (+) 1794 WP_263090668.1 oligopeptide ABC transporter substrate-binding protein -
  N8I82_RS02150 (N8I82_02150) oppA 409946..411745 (+) 1800 WP_263090669.1 oligopeptide ABC transporter substrate-binding protein Regulator
  N8I82_RS02155 (N8I82_02155) oppA 411942..413726 (+) 1785 WP_263090670.1 oligopeptide ABC transporter substrate-binding protein Regulator
  N8I82_RS02160 (N8I82_02160) - 414038..415039 (+) 1002 WP_204703333.1 ABC transporter ATP-binding protein -
  N8I82_RS02165 (N8I82_02165) - 415039..415983 (+) 945 WP_005607315.1 ABC transporter ATP-binding protein -
  N8I82_RS02170 (N8I82_02170) opp4B 415986..416948 (+) 963 WP_070437757.1 oligopeptide ABC transporter permease -
  N8I82_RS02175 (N8I82_02175) - 416967..417887 (+) 921 WP_070437760.1 ABC transporter permease -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 65936.66 Da        Isoelectric Point: 4.6765

>NTDB_id=734423 N8I82_RS02155 WP_263090670.1 411942..413726(+) (oppA) [Granulicatella adiacens strain KHUD_009]
MNKKKMMILFSATTALTLAACGGNNSSSSTTSTEAGTAKTKYASEVTHEGTPIKGGTLKYAIVSSSPFSGIFADELSQVT
TDSTIGGLIDESMFEYDENRKLTNTGLASIKFDVENKTATVTLNSKEYKWSDGQPVTIDDYIFAYQAIGNKDYTGVRYDG
DFKNVVGMEDYHNGKADSVSGLEKVDDYTVKIHFKEMSPSMQLAGGSVSAYIMPKHIFKDIPEAEWEQSDYVRGKKFVGL
GQFKIDSIVAGESVTLVPNEHYYKGVAKVDKVVMEVVSPDNIVSEMKAGNYDIATMPNAQYEAYKDLTNVTFLSSQESAY
EYIGFHLGKYDTATGKNVTDPNAKMSDVNLRQAMAYALDVEAAGQNLYNGLQHATNSIIIPFFKDVYNKDQEGFTYNPEK
AKQLLDEAGYKDVDGDGLRESKDGSKLKITFAARTRDEANESLVQQYLNWWKEIGLDVQLYTGRTIELNSFYDKIQADDP
EIDVFAAGWSTGYDPNPEGLFGETAKFNFERYVDPEGTAIMKKISSTEAFDSAKNIEFYKEWQKYVHDKAFIFPTLVGES
ITAVNKRVKYFDVNLGSKKSALYQVELTSDTAAK

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=734423 N8I82_RS02155 WP_263090670.1 411942..413726(+) (oppA) [Granulicatella adiacens strain KHUD_009]
ATGAACAAGAAAAAAATGATGATTTTATTTTCTGCAACGACAGCTTTAACCTTAGCTGCTTGTGGCGGAAATAATAGTAG
TTCGTCGACAACAAGTACTGAAGCCGGTACAGCCAAAACGAAGTATGCATCAGAAGTCACTCATGAAGGCACGCCGATTA
AAGGTGGCACATTAAAATATGCTATCGTATCTTCATCACCGTTTTCTGGGATTTTTGCAGATGAGTTGTCTCAAGTCACT
ACTGATTCAACTATCGGGGGTCTTATAGATGAAAGCATGTTTGAATATGATGAGAACCGTAAATTAACCAATACGGGTCT
AGCAAGTATTAAATTTGATGTTGAGAATAAAACAGCAACGGTCACTTTAAATTCAAAAGAGTATAAATGGTCGGATGGCC
AACCAGTGACAATCGATGACTATATTTTCGCTTATCAAGCTATCGGAAATAAAGACTATACAGGTGTTCGCTATGACGGT
GATTTTAAAAATGTCGTTGGGATGGAAGACTATCACAATGGAAAAGCAGATAGTGTTTCAGGTCTTGAAAAAGTGGATGA
TTACACGGTGAAAATTCACTTCAAAGAAATGAGCCCTTCAATGCAATTAGCCGGTGGTTCGGTTTCTGCTTATATTATGC
CAAAGCATATTTTCAAGGATATTCCTGAAGCGGAGTGGGAACAAAGTGATTACGTTCGTGGTAAAAAATTCGTTGGTCTT
GGACAATTCAAAATTGATTCTATTGTAGCCGGTGAATCTGTGACACTCGTTCCAAATGAACACTACTATAAAGGTGTAGC
AAAAGTTGATAAAGTCGTAATGGAAGTCGTTTCACCAGATAATATCGTGTCAGAAATGAAAGCTGGGAATTACGATATCG
CGACAATGCCAAACGCGCAATATGAAGCTTATAAAGATTTAACAAATGTGACTTTCTTAAGTTCACAAGAATCAGCCTAT
GAATATATCGGTTTCCACTTAGGAAAATATGATACTGCTACAGGTAAAAACGTAACAGATCCAAATGCAAAAATGAGTGA
TGTAAACCTACGTCAAGCGATGGCATACGCACTAGATGTTGAAGCAGCGGGTCAAAACTTGTATAACGGATTACAACATG
CCACAAATTCTATTATCATTCCGTTCTTTAAAGATGTTTATAATAAAGACCAAGAAGGATTTACTTACAATCCTGAAAAA
GCGAAACAATTATTGGATGAAGCAGGATATAAAGATGTGGATGGAGATGGACTTCGTGAGAGCAAAGACGGCTCTAAGTT
GAAAATTACTTTTGCCGCTCGTACACGTGACGAAGCCAACGAATCATTAGTACAACAATACTTAAACTGGTGGAAAGAAA
TCGGGTTAGACGTTCAACTGTACACAGGACGTACGATTGAATTGAACTCATTCTATGATAAAATCCAAGCGGATGATCCA
GAAATTGATGTGTTTGCAGCAGGATGGTCAACAGGTTACGATCCAAACCCAGAAGGATTGTTCGGGGAAACAGCGAAATT
TAACTTTGAACGTTATGTAGATCCAGAAGGAACTGCAATCATGAAGAAAATCAGTTCGACAGAAGCATTCGACTCAGCGA
AAAACATTGAGTTCTACAAAGAATGGCAAAAATACGTTCATGATAAAGCGTTTATCTTCCCAACGTTAGTCGGAGAATCG
ATTACTGCTGTTAACAAACGTGTGAAATACTTCGATGTTAACTTAGGTAGTAAAAAATCAGCTCTATATCAAGTCGAATT
AACGAGTGATACAGCAGCGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(115-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

55.259

100

0.557