Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   N8I82_RS02150 Genome accession   NZ_CP106751
Coordinates   409946..411745 (+) Length   599 a.a.
NCBI ID   WP_263090669.1    Uniprot ID   -
Organism   Granulicatella adiacens strain KHUD_009     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 404946..416745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I82_RS02130 (N8I82_02130) - 405295..406341 (+) 1047 WP_217951207.1 ABC transporter ATP-binding protein -
  N8I82_RS02135 (N8I82_02135) - 406334..407227 (+) 894 WP_217951206.1 ABC transporter ATP-binding protein -
  N8I82_RS02140 (N8I82_02140) acpP 407408..407650 (+) 243 WP_049554341.1 acyl carrier protein -
  N8I82_RS02145 (N8I82_02145) - 407909..409702 (+) 1794 WP_263090668.1 oligopeptide ABC transporter substrate-binding protein -
  N8I82_RS02150 (N8I82_02150) oppA 409946..411745 (+) 1800 WP_263090669.1 oligopeptide ABC transporter substrate-binding protein Regulator
  N8I82_RS02155 (N8I82_02155) oppA 411942..413726 (+) 1785 WP_263090670.1 oligopeptide ABC transporter substrate-binding protein Regulator
  N8I82_RS02160 (N8I82_02160) - 414038..415039 (+) 1002 WP_204703333.1 ABC transporter ATP-binding protein -
  N8I82_RS02165 (N8I82_02165) - 415039..415983 (+) 945 WP_005607315.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 66161.02 Da        Isoelectric Point: 4.8556

>NTDB_id=734422 N8I82_RS02150 WP_263090669.1 409946..411745(+) (oppA) [Granulicatella adiacens strain KHUD_009]
MKKKSLLFLSAAAAALTLAACGNANNGNSGNTSSEPAKASSKSKFNAEVTHEGTAIKGGTLKYALVAASPFSGIFIDELS
TNSTDSTIASQVDQSMFEYDENRKLTNTGLASLELDVEGKTATVTLNAKDYKWSDGQPFTIDDYIFAIEAIGNKDYTGSR
YNDRYQNIVGMKDFHEGKSDKISGVEKVDDYTVKIHFEKMLPSMQLAGGAIPAYTMPKHVFKDIPVKDWEQSEYVRGTKV
VGLGPFTIESIVPGESVTLKANENFYKGRPKVDKMVMQVVSPDSIVSEMKAGNYDIASMPSAQYEAFKDLTNVTFLSSFA
PSYEYISFKLGTFDKSQGKNVTNPKAKMSDPALRQAIGYALDIDSAGENLYHGLNYGTNSIILPFFKDVYNKEQEGFTYS
PEKAKQLLDEAGYKDVDGDGIRENKDGSKLTINFAARTRDAANESLIQQYLIWWKEVGLDVQLYTGRTIESNNFYVKIQA
DDPEIDMFAGGWGTGYDPNPSNLFGETAKFNFSRYVNEKGTEIMKKISSTDAFDDAKNKEFYKEWQAYAKDEAFMIPTLV
GDSVTAVNKRVKYYDTSIATSGSKSQVYQIELTSEDGAK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=734422 N8I82_RS02150 WP_263090669.1 409946..411745(+) (oppA) [Granulicatella adiacens strain KHUD_009]
ATGAAAAAGAAGAGCTTATTATTCTTATCAGCTGCAGCGGCAGCACTAACATTAGCAGCATGTGGGAATGCTAATAATGG
AAATAGTGGAAACACTTCATCTGAACCAGCAAAAGCAAGTTCAAAATCAAAATTTAATGCAGAAGTTACTCATGAAGGAA
CTGCAATTAAAGGAGGAACATTAAAATACGCTTTAGTAGCAGCTTCACCATTCAGTGGTATTTTTATTGATGAATTATCA
ACGAACTCTACTGACTCAACTATTGCAAGTCAAGTAGATCAATCAATGTTCGAGTATGATGAAAACCGTAAGTTAACAAA
TACAGGTTTAGCTTCATTAGAATTAGACGTTGAAGGAAAAACAGCGACTGTAACATTAAATGCGAAAGACTATAAATGGT
CAGACGGACAACCGTTCACTATCGACGATTATATCTTTGCAATCGAAGCCATCGGTAATAAAGACTATACAGGGTCTCGT
TATAATGACCGTTACCAAAATATTGTCGGAATGAAAGACTTCCACGAAGGCAAATCAGATAAGATTTCTGGTGTGGAAAA
AGTGGATGATTATACAGTGAAAATTCACTTTGAAAAAATGTTACCTTCTATGCAATTAGCAGGTGGAGCGATTCCAGCAT
ACACAATGCCAAAACATGTCTTCAAAGATATTCCAGTTAAAGATTGGGAACAAAGTGAATATGTACGCGGTACAAAAGTA
GTCGGCTTAGGACCGTTCACAATTGAATCAATCGTGCCAGGGGAATCTGTAACCTTAAAAGCAAATGAAAACTTCTATAA
AGGTCGTCCTAAAGTAGATAAAATGGTGATGCAAGTAGTTTCTCCAGACTCAATCGTTTCAGAAATGAAAGCTGGAAACT
ACGATATCGCAAGCATGCCAAGTGCTCAATATGAAGCATTCAAAGATTTAACAAACGTAACATTCTTAAGTTCATTTGCG
CCTTCTTATGAATACATTTCATTCAAATTAGGAACATTTGATAAATCACAAGGTAAAAACGTAACGAATCCAAAAGCGAA
AATGAGCGATCCAGCTCTTCGTCAAGCAATCGGTTATGCACTAGATATCGATTCAGCTGGTGAAAACTTATATCACGGAT
TGAACTATGGTACAAACTCTATCATCTTACCATTCTTCAAAGATGTATATAACAAAGAGCAAGAAGGATTTACTTATAGC
CCAGAGAAAGCTAAACAATTATTAGATGAAGCTGGTTATAAAGATGTTGATGGTGACGGAATCCGTGAAAATAAAGACGG
TTCTAAGTTAACGATTAACTTTGCTGCTCGTACTCGTGACGCAGCGAATGAATCATTAATCCAACAATACTTAATTTGGT
GGAAAGAAGTTGGTTTAGATGTACAACTTTATACAGGGCGTACAATTGAATCAAATAACTTCTACGTTAAAATTCAAGCA
GATGATCCAGAAATCGATATGTTCGCTGGTGGTTGGGGAACAGGTTATGATCCAAACCCATCTAACTTGTTTGGTGAAAC
AGCTAAATTTAACTTCTCTCGTTATGTAAATGAAAAAGGTACTGAAATCATGAAGAAAATTTCTTCAACAGACGCTTTTG
ACGATGCGAAAAATAAAGAGTTCTACAAAGAATGGCAAGCATATGCTAAAGATGAAGCTTTCATGATTCCAACTTTAGTA
GGGGACAGTGTAACTGCTGTAAATAAACGTGTGAAATATTATGACACTTCAATTGCAACAAGTGGTTCTAAATCTCAAGT
TTACCAAATCGAATTGACTTCTGAAGATGGAGCAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(114-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

53.654

100

0.539