Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDM80_RS10810 Genome accession   NZ_CP106749
Coordinates   2058362..2058778 (-) Length   138 a.a.
NCBI ID   WP_229930594.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10723     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2053362..2063778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDM80_RS10785 (NDM80_10785) - 2053709..2054584 (-) 876 WP_003686971.1 NUDIX hydrolase family protein -
  NDM80_RS10795 (NDM80_10795) thiC 2055182..2057083 (+) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  NDM80_RS10800 (NDM80_10800) - 2057572..2057942 (-) 371 Protein_2076 pilin -
  NDM80_RS10805 (NDM80_10805) - 2057982..2058335 (-) 354 Protein_2077 pilin -
  NDM80_RS10810 (NDM80_10810) pilE 2058362..2058778 (-) 417 WP_229930594.1 pilin Machinery gene
  NDM80_RS10815 (NDM80_10815) - 2059210..2059572 (-) 363 Protein_2079 pilin -
  NDM80_RS10820 (NDM80_10820) - 2059613..2059939 (-) 327 Protein_2080 pilin -
  NDM80_RS10825 (NDM80_10825) - 2059958..2060302 (-) 345 Protein_2081 pilin -
  NDM80_RS10830 (NDM80_10830) - 2060306..2060614 (+) 309 Protein_2082 NAD(P)-dependent oxidoreductase -
  NDM80_RS10835 (NDM80_10835) metG 2060689..2062743 (-) 2055 WP_003699323.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14981.85 Da        Isoelectric Point: 9.4277

>NTDB_id=734403 NDM80_RS10810 WP_229930594.1 2058362..2058778(-) (pilE) [Neisseria gonorrhoeae strain 10723]
MPTRLDSRLRGNDEAILLAEGQKSAVTEYYLNNGEWPKDNGSAGVASASEIKGKYVKEVKVENGVVTATMASSNVNKEIK
GKKLSLWARREAGSVKWFCGQPVKRDDKDNDTVADAAGKDKIDTKHLPSTCRDPASAK

Nucleotide


Download         Length: 417 bp        

>NTDB_id=734403 NDM80_RS10810 WP_229930594.1 2058362..2058778(-) (pilE) [Neisseria gonorrhoeae strain 10723]
GTGCCGACAAGGCTGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCGAATGGCCCAAAGACAACGGCTCTGCCGGCGTGGCATCCGCTTCAGAAATCAAAGGCA
AATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAAAGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGA
CAAAGACAACGACACCGTTGCCGACGCCGCCGGCAAAGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGTGATC
CGGCATCTGCCAAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

72.464

100

0.725
  pilE Neisseria gonorrhoeae strain FA1090

70.29

100

0.703