Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NDM80_RS10030 Genome accession   NZ_CP106749
Coordinates   1915741..1916136 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10723     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1910741..1921136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDM80_RS10010 (NDM80_10010) rfbC 1910818..1911375 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  NDM80_RS10015 (NDM80_10015) - 1911419..1913437 (-) 2019 WP_003690172.1 OPT family oligopeptide transporter -
  NDM80_RS10020 (NDM80_10020) dnaJ 1913632..1914753 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  NDM80_RS10025 (NDM80_10025) - 1914887..1915216 (+) 330 Protein_1931 transposase -
  NDM80_RS10030 (NDM80_10030) comE 1915741..1916136 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  NDM80_RS10035 (NDM80_10035) - 1916241..1916357 (-) 117 Protein_1933 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=734399 NDM80_RS10030 WP_003703428.1 1915741..1916136(-) (comE) [Neisseria gonorrhoeae strain 10723]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=734399 NDM80_RS10030 WP_003703428.1 1915741..1916136(-) (comE) [Neisseria gonorrhoeae strain 10723]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1