Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NDM80_RS01405 Genome accession   NZ_CP106749
Coordinates   283030..283833 (-) Length   267 a.a.
NCBI ID   WP_003687645.1    Uniprot ID   A0AA44ZGK5
Organism   Neisseria gonorrhoeae strain 10723     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 278030..288833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDM80_RS01395 (NDM80_01395) - 280434..280709 (-) 276 WP_154212468.1 hypothetical protein -
  NDM80_RS01400 (NDM80_01400) comA 280741..282960 (+) 2220 WP_020996780.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NDM80_RS01405 (NDM80_01405) comL 283030..283833 (-) 804 WP_003687645.1 outer membrane protein assembly factor BamD Machinery gene
  NDM80_RS01410 (NDM80_01410) rluD 283832..284956 (+) 1125 WP_003692709.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NDM80_RS01415 (NDM80_01415) - 285083..286057 (-) 975 Protein_278 bile acid:sodium symporter family protein -
  NDM80_RS01420 (NDM80_01420) - 286134..286358 (-) 225 WP_225577482.1 hypothetical protein -
  NDM80_RS01425 (NDM80_01425) pgeF 286510..287289 (+) 780 WP_003687651.1 peptidoglycan editing factor PgeF -
  NDM80_RS01430 (NDM80_01430) lptE 287341..287820 (+) 480 WP_003692715.1 LPS assembly lipoprotein LptE -
  NDM80_RS01435 (NDM80_01435) holA 287822..288820 (+) 999 WP_033911084.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30838.90 Da        Isoelectric Point: 9.1654

>NTDB_id=734368 NDM80_RS01405 WP_003687645.1 283030..283833(-) (comL) [Neisseria gonorrhoeae strain 10723]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=734368 NDM80_RS01405 WP_003687645.1 283030..283833(-) (comL) [Neisseria gonorrhoeae strain 10723]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGACAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

100

100

1
  comL Neisseria meningitidis MC58

96.255

100

0.963