Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   P4B20_RS02140 Genome accession   NZ_CP120706
Coordinates   460038..460403 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain NY11104     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 455038..465403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4B20_RS02110 (P4B20_02110) pyrR 455672..456184 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  P4B20_RS02115 (P4B20_02115) ruvX 456296..456730 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  P4B20_RS02120 (P4B20_02120) - 456730..457299 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  P4B20_RS02125 (P4B20_02125) - 457348..458241 (-) 894 WP_003162015.1 energy transducer TonB -
  P4B20_RS02130 (P4B20_02130) gshB 458388..459341 (-) 954 WP_003100943.1 glutathione synthase -
  P4B20_RS02135 (P4B20_02135) pilG 459596..459991 (+) 396 WP_309265103.1 twitching motility response regulator PilG Regulator
  P4B20_RS02140 (P4B20_02140) pilH 460038..460403 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  P4B20_RS02145 (P4B20_02145) - 460454..460990 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  P4B20_RS02150 (P4B20_02150) pilJ 461075..463123 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  P4B20_RS02155 (P4B20_02155) pilK 463184..464059 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=734158 P4B20_RS02140 WP_003084587.1 460038..460403(+) (pilH) [Pseudomonas aeruginosa strain NY11104]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=734158 P4B20_RS02140 WP_003084587.1 460038..460403(+) (pilH) [Pseudomonas aeruginosa strain NY11104]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364