Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PALA11_RS23840 | Genome accession | NZ_CP106680 |
| Coordinates | 5123002..5123874 (+) | Length | 290 a.a. |
| NCBI ID | WP_023113572.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain PALA11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5118002..5128874
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PALA11_RS23815 (PALA11_04730) | nadC | 5118357..5119205 (+) | 849 | WP_023113571.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| PALA11_RS23825 | pilA | 5119393..5119845 (-) | 453 | WP_024947914.1 | pilin | Machinery gene |
| PALA11_RS23830 (PALA11_04732) | pilB | 5120074..5121774 (+) | 1701 | WP_009875880.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PALA11_RS23835 (PALA11_04733) | pilC | 5121778..5122998 (+) | 1221 | WP_016253888.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| PALA11_RS23840 (PALA11_04734) | pilD | 5123002..5123874 (+) | 873 | WP_023113572.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PALA11_RS23845 (PALA11_04735) | coaE | 5123871..5124482 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| PALA11_RS23850 (PALA11_04736) | yacG | 5124479..5124679 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PALA11_RS23855 (PALA11_04737) | - | 5124716..5124925 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| PALA11_RS23860 (PALA11_04738) | - | 5125031..5125720 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| PALA11_RS23865 (PALA11_04739) | - | 5125717..5126187 (-) | 471 | WP_003103866.1 | hypothetical protein | - |
| PALA11_RS23870 (PALA11_04740) | - | 5126184..5126609 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| PALA11_RS23875 (PALA11_04741) | - | 5126742..5127371 (+) | 630 | WP_015648058.1 | DUF1780 domain-containing protein | - |
| PALA11_RS23880 (PALA11_04742) | - | 5127368..5127817 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| PALA11_RS23885 (PALA11_04743) | - | 5127843..5128013 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31786.84 Da Isoelectric Point: 7.3233
>NTDB_id=734106 PALA11_RS23840 WP_023113572.1 5123002..5123874(+) (pilD) [Pseudomonas aeruginosa strain PALA11]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMECNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMECNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=734106 PALA11_RS23840 WP_023113572.1 5123002..5123874(+) (pilD) [Pseudomonas aeruginosa strain PALA11]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGTGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGTGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.357 |
96.552 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |