Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   N7980_RS04975 Genome accession   NZ_CP106671
Coordinates   984367..985011 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116301     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 979367..990011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS04945 (N7980_04945) - 979782..980150 (-) 369 WP_041850584.1 hypothetical protein -
  N7980_RS04950 (N7980_04950) - 980329..980391 (-) 63 Protein_982 hypothetical protein -
  N7980_RS04955 (N7980_04955) degQ 980613..980753 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  N7980_RS04960 (N7980_04960) - 980937..981797 (+) 861 WP_041850585.1 polyprenyl synthetase family protein -
  N7980_RS04965 (N7980_04965) comX 981810..981974 (+) 165 WP_015384519.1 competence pheromone ComX -
  N7980_RS04970 (N7980_04970) comP 981986..984286 (+) 2301 WP_088300729.1 histidine kinase Regulator
  N7980_RS04975 (N7980_04975) comA 984367..985011 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  N7980_RS04980 (N7980_04980) yuxO 985030..985410 (+) 381 WP_003228810.1 hotdog fold thioesterase -
  N7980_RS04985 (N7980_04985) mnhG 985449..985823 (-) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  N7980_RS04990 (N7980_04990) mrpF 985807..986091 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  N7980_RS04995 (N7980_04995) mrpE 986091..986567 (-) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  N7980_RS05000 (N7980_05000) mrpD 986573..988054 (-) 1482 WP_043940184.1 Na+/H+ antiporter subunit D -
  N7980_RS05005 (N7980_05005) mrpC 988047..988388 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  N7980_RS05010 (N7980_05010) mrpB 988388..988819 (-) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=733864 N7980_RS04975 WP_003220716.1 984367..985011(+) (comA) [Bacillus subtilis strain SRCM116301]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=733864 N7980_RS04975 WP_003220716.1 984367..985011(+) (comA) [Bacillus subtilis strain SRCM116301]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1