Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   N7980_RS02990 Genome accession   NZ_CP106671
Coordinates   586031..586753 (+) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM116301     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 581031..591753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS02965 (N7980_02965) degS 581342..582499 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  N7980_RS02970 (N7980_02970) degU 582582..583271 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  N7980_RS02975 (N7980_02975) fakBA 583369..584214 (+) 846 WP_262319544.1 DegV family protein -
  N7980_RS02980 (N7980_02980) comFA 584320..585711 (+) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  N7980_RS02985 (N7980_02985) comFB 585771..586067 (+) 297 WP_003227989.1 late competence protein ComFB -
  N7980_RS02990 (N7980_02990) comFC 586031..586753 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  N7980_RS02995 (N7980_02995) yvyF 586827..587246 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  N7980_RS03000 (N7980_03000) flgM 587327..587593 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  N7980_RS03005 (N7980_03005) flgN 587609..588091 (+) 483 WP_014481048.1 flagellar protein FlgN -
  N7980_RS03010 (N7980_03010) flgK 588110..589633 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  N7980_RS03015 (N7980_03015) flgL 589644..590540 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  N7980_RS03020 (N7980_03020) yviE 590587..591162 (+) 576 WP_041850476.1 DUF6470 family protein -
  N7980_RS03025 (N7980_03025) fliW 591183..591614 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=733859 N7980_RS02990 WP_014481051.1 586031..586753(+) (comFC) [Bacillus subtilis strain SRCM116301]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=733859 N7980_RS02990 WP_014481051.1 586031..586753(+) (comFC) [Bacillus subtilis strain SRCM116301]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992