Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   N7980_RS02970 Genome accession   NZ_CP106671
Coordinates   582582..583271 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM116301     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 577582..588271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7980_RS02950 (N7980_02950) tagO 578139..579215 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  N7980_RS02955 (N7980_02955) tagV 579288..580472 (-) 1185 WP_041850474.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  N7980_RS02960 (N7980_02960) yvyE 580472..581125 (-) 654 WP_003227979.1 YigZ family protein -
  N7980_RS02965 (N7980_02965) degS 581342..582499 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  N7980_RS02970 (N7980_02970) degU 582582..583271 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  N7980_RS02975 (N7980_02975) fakBA 583369..584214 (+) 846 WP_262319544.1 DegV family protein -
  N7980_RS02980 (N7980_02980) comFA 584320..585711 (+) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  N7980_RS02985 (N7980_02985) comFB 585771..586067 (+) 297 WP_003227989.1 late competence protein ComFB -
  N7980_RS02990 (N7980_02990) comFC 586031..586753 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  N7980_RS02995 (N7980_02995) yvyF 586827..587246 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  N7980_RS03000 (N7980_03000) flgM 587327..587593 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  N7980_RS03005 (N7980_03005) flgN 587609..588091 (+) 483 WP_014481048.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=733857 N7980_RS02970 WP_003219701.1 582582..583271(+) (degU) [Bacillus subtilis strain SRCM116301]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=733857 N7980_RS02970 WP_003219701.1 582582..583271(+) (degU) [Bacillus subtilis strain SRCM116301]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1