Detailed information NTG0733766

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N7990_RS21330
• Genome accession: NZ_CP106654
• Coordinates: 4304038..4304838 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP5076
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4299038..4309838

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N7990_RS21295 (N7990_21295)	gspH	4299194..4299709 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
N7990_RS21300 (N7990_21300)	gspI	4299706..4300071 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
N7990_RS21305 (N7990_21305)	gspJ	4300068..4300664 (+)	597	WP_023279276.1	type II secretion system minor pseudopilin GspJ	-
N7990_RS21310 (N7990_21310)	gspK	4300661..4301647 (+)	987	WP_023279277.1	type II secretion system minor pseudopilin GspK	-
N7990_RS21315 (N7990_21315)	gspL	4301634..4302827 (+)	1194	WP_021441216.1	type II secretion system protein GspL	-
N7990_RS21320 (N7990_21320)	-	4302820..4303305 (+)	486	WP_004151943.1	type II secretion system protein M	-
N7990_RS21325 (N7990_21325)	-	4303295..4304041 (+)	747	WP_004145897.1	type II secretion system protein N	-
N7990_RS21330 (N7990_21330)	pilD	4304038..4304838 (+)	801	WP_004145898.1	prepilin peptidase	Machinery gene
N7990_RS21335 (N7990_21335)	hrpB	4304886..4307315 (-)	2430	WP_023300747.1	ATP-dependent helicase HrpB	-
N7990_RS21340 (N7990_21340)	thpR	4307388..4307924 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
N7990_RS21345 (N7990_21345)	sfsA	4307924..4308640 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
N7990_RS21350 (N7990_21350)	dksA	4308803..4309258 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=733766 N7990_RS21330 WP_004145898.1 4304038..4304838(+) (pilD) [Klebsiella pneumoniae strain KP5076]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=733766 N7990_RS21330 WP_004145898.1 4304038..4304838(+) (pilD) [Klebsiella pneumoniae strain KP5076]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCTCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425