Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   N7921_RS15560 Genome accession   NZ_CP106652
Coordinates   2967483..2968124 (-) Length   213 a.a.
NCBI ID   WP_144472265.1    Uniprot ID   -
Organism   Bacillus safensis strain 33.4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2962483..2973124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7921_RS15525 (N7921_15525) - 2963597..2964028 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  N7921_RS15530 (N7921_15530) - 2964028..2964369 (+) 342 WP_048237322.1 Na(+)/H(+) antiporter subunit C -
  N7921_RS15535 (N7921_15535) - 2964362..2965840 (+) 1479 WP_144483380.1 Na+/H+ antiporter subunit D -
  N7921_RS15540 (N7921_15540) - 2965847..2966326 (+) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  N7921_RS15545 (N7921_15545) - 2966326..2966607 (+) 282 WP_039181117.1 Na(+)/H(+) antiporter subunit F1 -
  N7921_RS15550 (N7921_15550) mnhG 2966591..2966965 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  N7921_RS15555 (N7921_15555) - 2967070..2967459 (-) 390 WP_095409463.1 hotdog fold thioesterase -
  N7921_RS15560 (N7921_15560) comA 2967483..2968124 (-) 642 WP_144472265.1 response regulator transcription factor Regulator
  N7921_RS15565 (N7921_15565) comP 2968205..2970517 (-) 2313 WP_144483383.1 ATP-binding protein Regulator
  N7921_RS15570 (N7921_15570) - 2970575..2970742 (-) 168 WP_186318690.1 competence pheromone ComX -
  N7921_RS15575 (N7921_15575) - 2970739..2971653 (-) 915 WP_144483387.1 polyprenyl synthetase family protein -
  N7921_RS15580 (N7921_15580) degQ 2971805..2971945 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  N7921_RS15585 (N7921_15585) - 2972451..2972807 (+) 357 WP_144483390.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24153.53 Da        Isoelectric Point: 4.5634

>NTDB_id=733734 N7921_RS15560 WP_144472265.1 2967483..2968124(-) (comA) [Bacillus safensis strain 33.4]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILENNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=733734 N7921_RS15560 WP_144472265.1 2967483..2968124(-) (comA) [Bacillus safensis strain 33.4]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATTTTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGACGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAGCAAATCTTAGAAAACAACCAGCAAGTAAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGTAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGCACATTACAAGGAGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGACCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTAGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723