Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   N7921_RS12230 Genome accession   NZ_CP106652
Coordinates   2351877..2352212 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain 33.4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2346877..2357212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7921_RS12210 (N7921_12210) gcvT 2347355..2348452 (-) 1098 WP_144484612.1 glycine cleavage system aminomethyltransferase GcvT -
  N7921_RS12215 (N7921_12215) - 2349014..2350684 (+) 1671 WP_144484614.1 DEAD/DEAH box helicase -
  N7921_RS12220 (N7921_12220) - 2350699..2351496 (+) 798 WP_144484616.1 YqhG family protein -
  N7921_RS12225 (N7921_12225) - 2351679..2351843 (+) 165 WP_095408995.1 anti-repressor SinI family protein -
  N7921_RS12230 (N7921_12230) sinR 2351877..2352212 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  N7921_RS12235 (N7921_12235) tasA 2352280..2353080 (-) 801 WP_111292280.1 biofilm matrix protein TasA -
  N7921_RS12240 (N7921_12240) sipW 2353135..2353707 (-) 573 WP_144484618.1 signal peptidase I SipW -
  N7921_RS12245 (N7921_12245) tapA 2353760..2354287 (-) 528 WP_095408998.1 amyloid fiber anchoring/assembly protein TapA -
  N7921_RS12250 (N7921_12250) - 2354587..2354865 (+) 279 WP_223251017.1 DUF3889 domain-containing protein -
  N7921_RS12255 (N7921_12255) - 2354899..2355093 (-) 195 WP_024718846.1 YqzE family protein -
  N7921_RS12260 (N7921_12260) - 2355153..2355536 (-) 384 WP_144484620.1 competence type IV pilus minor pilin ComGG -
  N7921_RS12265 (N7921_12265) comGF 2355533..2356060 (-) 528 WP_186437312.1 competence type IV pilus minor pilin ComGF -
  N7921_RS12270 (N7921_12270) comGE 2355972..2356286 (-) 315 WP_144484624.1 competence type IV pilus minor pilin ComGE -
  N7921_RS12275 (N7921_12275) comGD 2356270..2356716 (-) 447 WP_144484626.1 competence type IV pilus minor pilin ComGD -
  N7921_RS12280 (N7921_12280) comGC 2356709..2357002 (-) 294 WP_144484628.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=733722 N7921_RS12230 WP_024422969.1 2351877..2352212(+) (sinR) [Bacillus safensis strain 33.4]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=733722 N7921_RS12230 WP_024422969.1 2351877..2352212(+) (sinR) [Bacillus safensis strain 33.4]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946