Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   N7921_RS12045 Genome accession   NZ_CP106652
Coordinates   2319705..2321438 (-) Length   577 a.a.
NCBI ID   WP_263639729.1    Uniprot ID   -
Organism   Bacillus safensis strain 33.4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2314705..2326438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7921_RS12030 (N7921_12030) - 2315581..2316681 (-) 1101 WP_144484601.1 Rap family tetratricopeptide repeat protein -
  N7921_RS12035 (N7921_12035) spo0A 2317138..2317941 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  N7921_RS12040 (N7921_12040) spoIVB 2318227..2319504 (-) 1278 WP_025092993.1 SpoIVB peptidase -
  N7921_RS12045 (N7921_12045) recN 2319705..2321438 (-) 1734 WP_263639729.1 DNA repair protein RecN Machinery gene
  N7921_RS12050 (N7921_12050) ahrC 2321472..2321921 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  N7921_RS12055 (N7921_12055) - 2322087..2322941 (-) 855 WP_095408976.1 TlyA family RNA methyltransferase -
  N7921_RS12060 (N7921_12060) dxs 2322938..2324839 (-) 1902 WP_095408977.1 1-deoxy-D-xylulose-5-phosphate synthase -
  N7921_RS12065 (N7921_12065) - 2324990..2325880 (-) 891 WP_041106827.1 polyprenyl synthetase family protein -
  N7921_RS12070 (N7921_12070) - 2325870..2326130 (-) 261 WP_041106828.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64725.54 Da        Isoelectric Point: 4.7748

>NTDB_id=733721 N7921_RS12045 WP_263639729.1 2319705..2321438(-) (recN) [Bacillus safensis strain 33.4]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISILREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=733721 N7921_RS12045 WP_263639729.1 2319705..2321438(-) (recN) [Bacillus safensis strain 33.4]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTCCT
AACAGGGGAAACAGGTGCTGGAAAATCCATCATGATTGACGCTGTCTCGCTTCTCGTGGGAGGAAGAGGTTCTTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTTTGC
GAAGAGCAAGGAATTGATGCGTCAGATGAAATGATGATCCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
TATTAATGGAAAGCTTGTCACCATCTCAATTTTACGTGAAGTAGGACGGCTTTTGCTTGATATACATGGTCAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTTGATCAATTTGGGGCAGAAGAAATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTAAGGCAGCTGTCTGAGAACGAGCAGGAAATGGT
GCACCGGTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCGCAATTAGAGCCAGGAGAAGATGAGAGGCTTC
AGGAAGAGCGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTTCAAAACGCGTATAACGCCTTGCGTAATGAA
CAAGGAGGACTTGATTGGGTTGGCATGTCCTCAAGCGAGCTTGAGCAGGTGTCTGAGATCAACGATGATTTGAAGAAGCT
ATCCGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACCTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATTCAAAATCGAGACAGCCACCTCCAAACGCT
CAAAAATAAACTGGATGCGATGAGCCGTGATGCTCTGCTTGAAGCACTTAATGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCGAAGCAAATTCAAACAGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCATTTGGCAGCACCGATTGTCCGCTATTAGACGGAAAACCTGTCCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCTAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGT
GTCAGCGGCAGAGTGGCACAAGCCATTGCTGAGAAAATTTACAAAGTTGCGTCTGGATCACAAGTGCTCTGTATTACACA
CCTACCTCAAGTAGCCGCAATGGCTGACACGCATCTCTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.91

100

0.759