Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   N7921_RS12035 Genome accession   NZ_CP106652
Coordinates   2317138..2317941 (-) Length   267 a.a.
NCBI ID   WP_024422935.1    Uniprot ID   A0AAX0Z9Q1
Organism   Bacillus safensis strain 33.4     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2312138..2322941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7921_RS12020 (N7921_12020) - 2314344..2314580 (+) 237 WP_144484599.1 DUF2627 domain-containing protein -
  N7921_RS12025 (N7921_12025) - 2314617..2315354 (-) 738 WP_048239245.1 glycerophosphodiester phosphodiesterase -
  N7921_RS12030 (N7921_12030) - 2315581..2316681 (-) 1101 WP_144484601.1 Rap family tetratricopeptide repeat protein -
  N7921_RS12035 (N7921_12035) spo0A 2317138..2317941 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  N7921_RS12040 (N7921_12040) spoIVB 2318227..2319504 (-) 1278 WP_025092993.1 SpoIVB peptidase -
  N7921_RS12045 (N7921_12045) recN 2319705..2321438 (-) 1734 WP_263639729.1 DNA repair protein RecN Machinery gene
  N7921_RS12050 (N7921_12050) ahrC 2321472..2321921 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  N7921_RS12055 (N7921_12055) - 2322087..2322941 (-) 855 WP_095408976.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29932.46 Da        Isoelectric Point: 6.3918

>NTDB_id=733720 N7921_RS12035 WP_024422935.1 2317138..2317941(-) (spo0A) [Bacillus safensis strain 33.4]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=733720 N7921_RS12035 WP_024422935.1 2317138..2317941(-) (spo0A) [Bacillus safensis strain 33.4]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTGTTGACAGAGTACATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGAAATGACGAAACAG
CCAAGTGTGATTATGCTAACGGCATTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCCTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCTATCCAAAACAGTGTTCTTCGTAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACCATC
ATTCATGAGATTGGCGTGCCCGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCGATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACTAAAGTGTTGTACCCAGACATTGCGAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTGGCTTGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAACCAACCAATTCAGAATTTATTGCCATGGTAGCCGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884