Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N7921_RS08650 Genome accession   NZ_CP106652
Coordinates   1656184..1657086 (+) Length   300 a.a.
NCBI ID   WP_095408472.1    Uniprot ID   -
Organism   Bacillus safensis strain 33.4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1651184..1662086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7921_RS08630 (N7921_08630) - 1651847..1653586 (+) 1740 WP_263640201.1 glycosyltransferase -
  N7921_RS08635 (N7921_08635) - 1653583..1653858 (+) 276 WP_047202155.1 FlhB-like flagellar biosynthesis protein -
  N7921_RS08640 (N7921_08640) sucC 1654035..1655195 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  N7921_RS08645 (N7921_08645) sucD 1655218..1656120 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  N7921_RS08650 (N7921_08650) dprA 1656184..1657086 (+) 903 WP_095408472.1 DNA-processing protein DprA Machinery gene
  N7921_RS08655 (N7921_08655) topA 1657279..1659354 (+) 2076 WP_111290908.1 type I DNA topoisomerase -
  N7921_RS08660 (N7921_08660) trmFO 1659425..1660729 (+) 1305 WP_034317774.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  N7921_RS08665 (N7921_08665) xerC 1660792..1661709 (+) 918 WP_041108978.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34083.51 Da        Isoelectric Point: 9.1119

>NTDB_id=733714 N7921_RS08650 WP_095408472.1 1656184..1657086(+) (dprA) [Bacillus safensis strain 33.4]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
LPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSAYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=733714 N7921_RS08650 WP_095408472.1 1656184..1657086(+) (dprA) [Bacillus safensis strain 33.4]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
CTTCCCATCACATCGCCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACAAGAGTTCCGTCAGCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGATGATTGTCAGTGGTTTAGCGAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGCTTTCAGCATTTATATCCAAAAGAGCATGC
GCAAATGGCTCAATACATGGGAGAGCATCATTTGCTTTTGTCAGAGCATCCGCCTTATGTTAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGGACGATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCAGTTGCGGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Legionella pneumophila strain ERS1305867

38.361

100

0.39
  dprA Lactococcus lactis subsp. cremoris KW2

38.194

96

0.367