Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GOZ34_RS07800 Genome accession   NZ_AP019712
Coordinates   1640013..1640699 (-) Length   228 a.a.
NCBI ID   WP_155978178.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Tokyo12480     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1635013..1645699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOZ34_RS07780 (TMSFP480_15050) rpsT 1635927..1636178 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  GOZ34_RS07785 (TMSFP480_15060) holA 1636223..1637197 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  GOZ34_RS07790 (TMSFP480_15070) comEC 1637254..1639455 (-) 2202 WP_029549646.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GOZ34_RS07795 (TMSFP480_15080) - 1639460..1639921 (-) 462 WP_000439693.1 ComE operon protein 2 -
  GOZ34_RS07800 (TMSFP480_15090) comEA 1640013..1640699 (-) 687 WP_155978178.1 ComEA family DNA-binding protein Machinery gene
  GOZ34_RS07805 (TMSFP480_15100) - 1640739..1641455 (-) 717 WP_029549644.1 class I SAM-dependent DNA methyltransferase -
  GOZ34_RS07810 (TMSFP480_15110) rsfS 1641458..1641811 (-) 354 WP_001088020.1 ribosome silencing factor -
  GOZ34_RS07815 (TMSFP480_15120) yqeK 1641812..1642396 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  GOZ34_RS07820 (TMSFP480_15130) nadD 1642386..1642955 (-) 570 WP_029549643.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  GOZ34_RS07825 (TMSFP480_15140) yhbY 1642958..1643248 (-) 291 WP_000955232.1 ribosome assembly RNA-binding protein YhbY -
  GOZ34_RS07830 (TMSFP480_15150) aroE 1643252..1644058 (-) 807 WP_029549642.1 shikimate dehydrogenase -
  GOZ34_RS07835 (TMSFP480_15160) yqeH 1644072..1645172 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25742.44 Da        Isoelectric Point: 9.5275

>NTDB_id=73371 GOZ34_RS07800 WP_155978178.1 1640013..1640699(-) (comEA) [Staphylococcus aureus strain Tokyo12480]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDSALKQSTSENSSLSKLEDVQAKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLIDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNPNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=73371 GOZ34_RS07800 WP_155978178.1 1640013..1640699(-) (comEA) [Staphylococcus aureus strain Tokyo12480]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATAGTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGCCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAATAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACCCAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.035

99.561

0.956

Multiple sequence alignment