Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   GOZ34_RS07560 Genome accession   NZ_AP019712
Coordinates   1593286..1593732 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Tokyo12480     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1588286..1598732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOZ34_RS07530 (TMSFP480_14560) gcvPA 1589212..1590558 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  GOZ34_RS07535 (TMSFP480_14570) gcvT 1590578..1591669 (-) 1092 WP_155978173.1 glycine cleavage system aminomethyltransferase GcvT -
  GOZ34_RS07540 (TMSFP480_14580) - 1591828..1592352 (-) 525 WP_001015120.1 shikimate kinase -
  GOZ34_RS07545 - 1592342..1592488 (-) 147 WP_001789879.1 hypothetical protein -
  GOZ34_RS07550 (TMSFP480_14590) comGF 1592585..1593082 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  GOZ34_RS07555 (TMSFP480_14600) comGE 1593000..1593299 (-) 300 WP_173020051.1 competence protein ComGE Machinery gene
  GOZ34_RS07560 (TMSFP480_14610) comGD 1593286..1593732 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  GOZ34_RS07565 (TMSFP480_14620) comGC 1593710..1594021 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  GOZ34_RS07570 (TMSFP480_14630) comGB 1594035..1595105 (-) 1071 WP_000776418.1 competence type IV pilus assembly protein ComGB Machinery gene
  GOZ34_RS07575 (TMSFP480_14640) comGA 1595077..1596051 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  GOZ34_RS07580 (TMSFP480_14650) - 1596103..1596726 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  GOZ34_RS07585 (TMSFP480_14660) - 1596723..1597052 (-) 330 WP_029549654.1 MTH1187 family thiamine-binding protein -
  GOZ34_RS07590 (TMSFP480_14670) - 1597052..1598038 (-) 987 WP_000161315.1 ROK family glucokinase -
  GOZ34_RS07595 (TMSFP480_14680) - 1598035..1598238 (-) 204 WP_000087559.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=73365 GOZ34_RS07560 WP_001796473.1 1593286..1593732(-) (comGD) [Staphylococcus aureus strain Tokyo12480]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=73365 GOZ34_RS07560 WP_001796473.1 1593286..1593732(-) (comGD) [Staphylococcus aureus strain Tokyo12480]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment