Detailed information NTG0733519

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: RS71_RS04680
• Genome accession: NZ_CP104920
• Coordinates: 1017709..1018260 (+)
• Length: 183 a.a.
• NCBI ID: WP_022634792.1
• Uniprot ID: -
• Organism: Dickeya solani strain RNS 05.1.2A
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1017709..1041482	1017709..1018260	within	0

Gene organization within MGE regions

Location: 1017709..1041482

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RS71_RS04680	ssb	1017709..1018260 (+)	552	WP_022634792.1	single-stranded DNA-binding protein	Machinery gene
RS71_RS04685	-	1018545..1018730 (-)	186	WP_057084149.1	hypothetical protein	-
RS71_RS04690	-	1018909..1019397 (+)	489	WP_022634795.1	hypothetical protein	-
RS71_RS04695	-	1019660..1020232 (+)	573	WP_057084150.1	DUF4255 domain-containing protein	-
RS71_RS04700	-	1020239..1021048 (+)	810	WP_057084151.1	hypothetical protein	-
RS71_RS04705	-	1021192..1022745 (+)	1554	WP_057084152.1	phage tail sheath family protein	-
RS71_RS04710	-	1022797..1023267 (+)	471	WP_022634799.1	phage tail protein	-
RS71_RS04715	-	1023354..1023812 (+)	459	WP_226061793.1	phage tail protein	-
RS71_RS04720	-	1023833..1024015 (+)	183	WP_057084178.1	hypothetical protein	-
RS71_RS04725	-	1024031..1024678 (+)	648	WP_057084154.1	hypothetical protein	-
RS71_RS04730	vgrG	1024690..1026480 (+)	1791	WP_057084155.1	type VI secretion system tip protein VgrG	-
RS71_RS04735	-	1026846..1027145 (+)	300	WP_057084156.1	PAAR domain-containing protein	-
RS71_RS04740	-	1027148..1027567 (+)	420	WP_022634805.1	GPW/gp25 family protein	-
RS71_RS04745	-	1027564..1031661 (+)	4098	WP_057084157.1	baseplate J/gp47 family protein	-
RS71_RS04750	-	1031779..1032606 (+)	828	WP_057084158.1	hypothetical protein	-
RS71_RS04755	-	1032609..1035095 (+)	2487	WP_057084159.1	hypothetical protein	-
RS71_RS04760	-	1035092..1038916 (+)	3825	WP_057084160.1	contractile injection system tape measure protein	-
RS71_RS04765	-	1039008..1041482 (+)	2475	WP_057084161.1	hypothetical protein	-

Sequence

Protein

• Length: 183 a.a.
• Molecular weight: 19717.72 Da
• Isoelectric Point: 4.9658

>NTDB_id=733519 RS71_RS04680 WP_022634792.1 1017709..1018260(+) (ssb) [Dickeya solani strain RNS 05.1.2A]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGGMGNNAGGNPQQGGWGQPQQPQQENQFSGGGQPQS
RPQQSAPMPGNEPPMDFDDDIPF

Nucleotide

• Length: 552 bp

>NTDB_id=733519 RS71_RS04680 WP_022634792.1 1017709..1018260(+) (ssb) [Dickeya solani strain RNS 05.1.2A]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAACGCACCG
AGTGGCACCGCGTCGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGTGAATACCTGCGCAAAGGCTCTCAGGTATATATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGACCAGGGCGGTCAGGACCGCTACACCACCGAAGTGGTAGTCGATATCTC
CGGCAGCATGCAGATGCTGGGCGGCCGCACAGGCGGCGGCGCTCCGGCCGGTGGCGGCATGGGCAACAATGCGGGCGGCA
ATCCGCAGCAAGGCGGTTGGGGTCAGCCGCAACAGCCGCAGCAAGAGAACCAGTTCAGCGGCGGCGGTCAGCCCCAGTCC
CGTCCGCAGCAAAGCGCGCCGATGCCGGGCAACGAGCCGCCGATGGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	74.054	100	0.749
ssb	Glaesserella parasuis strain SC1401	54.645	100	0.546
ssb	Neisseria meningitidis MC58	45.503	100	0.47
ssb	Neisseria gonorrhoeae MS11	45.503	100	0.47