Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   N8E86_RS03530 Genome accession   NZ_CP104914
Coordinates   705142..705498 (-) Length   118 a.a.
NCBI ID   WP_264256656.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AG21-0333     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 700142..710498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E86_RS03495 (N8E86_03495) - 700275..700652 (-) 378 WP_017805060.1 hypothetical protein -
  N8E86_RS03500 (N8E86_03500) - 700795..701397 (+) 603 WP_035685401.1 beta-phosphoglucomutase family hydrolase -
  N8E86_RS03505 (N8E86_03505) - 701398..702006 (+) 609 WP_264256650.1 sugar O-acetyltransferase -
  N8E86_RS03510 (N8E86_03510) - 701999..702457 (+) 459 WP_264256652.1 YqaA family protein -
  N8E86_RS03515 (N8E86_03515) luxS 702680..703186 (+) 507 WP_264245666.1 S-ribosylhomocysteine lyase -
  N8E86_RS03520 (N8E86_03520) hemW 703254..704408 (-) 1155 WP_264256654.1 radical SAM family heme chaperone HemW -
  N8E86_RS03525 (N8E86_03525) rdgB 704408..705004 (-) 597 WP_017805053.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  N8E86_RS03530 (N8E86_03530) comE1/comEA 705142..705498 (-) 357 WP_264256656.1 helix-hairpin-helix domain-containing protein Machinery gene
  N8E86_RS03535 (N8E86_03535) - 705761..707074 (-) 1314 WP_264256658.1 NCS2 family permease -
  N8E86_RS03540 (N8E86_03540) galE 707281..708297 (+) 1017 WP_264256659.1 UDP-glucose 4-epimerase GalE -
  N8E86_RS03545 (N8E86_03545) - 708364..709632 (+) 1269 WP_130230125.1 AmpG family muropeptide MFS transporter -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12870.73 Da        Isoelectric Point: 7.0137

>NTDB_id=733472 N8E86_RS03530 WP_264256656.1 705142..705498(-) (comE1/comEA) [Avibacterium paragallinarum strain AG21-0333]
MKIKTILSSLILAITFIGSVYADETVNPPTTTQVTDNKTIDTTFIGEKLNINTASASEIQKALVGIGAKKAEAIVEYREQ
HGKFIAPEQLLEVKGIGKAIFEKNKDRIDLSSFNSNSQ

Nucleotide


Download         Length: 357 bp        

>NTDB_id=733472 N8E86_RS03530 WP_264256656.1 705142..705498(-) (comE1/comEA) [Avibacterium paragallinarum strain AG21-0333]
ATGAAAATTAAAACGATTTTATCTTCTCTCATTTTGGCAATAACATTTATTGGTTCGGTTTATGCTGATGAAACAGTGAA
TCCACCAACCACGACACAAGTGACGGATAATAAAACTATCGACACCACATTTATTGGCGAAAAGCTCAATATTAATACGG
CAAGTGCAAGTGAAATTCAAAAAGCCTTAGTAGGCATTGGGGCGAAGAAAGCAGAAGCTATCGTGGAATATCGAGAACAA
CACGGTAAATTTATCGCTCCAGAACAACTATTAGAAGTAAAGGGGATCGGAAAAGCGATTTTTGAAAAAAATAAAGATCG
CATAGATTTATCTTCATTTAATAGTAATAGCCAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(47-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

51.818

93.22

0.483
  comEA/comE1 Glaesserella parasuis strain SC1401

50

89.831

0.449