Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   P5647_RS07985 Genome accession   NZ_CP120622
Coordinates   1522081..1523106 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain DSM 1090     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1517081..1528106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5647_RS07950 (P5647_07950) ylbE 1517381..1517620 (+) 240 WP_003232231.1 YlbE-like family protein -
  P5647_RS07955 (P5647_07955) ylbF 1517736..1518185 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  P5647_RS07960 (P5647_07960) ylbG 1518240..1518512 (+) 273 WP_009967171.1 YlbG family protein -
  P5647_RS07965 (P5647_07965) rsmD 1518835..1519389 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P5647_RS07970 (P5647_07970) coaD 1519394..1519879 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  P5647_RS07975 (P5647_07975) spoVV 1519890..1521116 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  P5647_RS07980 (P5647_07980) ylbK 1521297..1522079 (+) 783 WP_003232221.1 patatin family protein -
  P5647_RS07985 (P5647_07985) sepM 1522081..1523106 (+) 1026 WP_003245451.1 protease DdcP Regulator
  P5647_RS07990 (P5647_07990) tmcAL 1523123..1524370 (-) 1248 WP_003244707.1 nucleotidyltransferase -
  P5647_RS07995 (P5647_07995) - 1524367..1524552 (-) 186 WP_003232215.1 hypothetical protein -
  P5647_RS08000 (P5647_08000) ylbN 1524580..1525098 (+) 519 WP_003232214.1 DUF177 domain-containing protein -
  P5647_RS08005 (P5647_08005) rpmF 1525120..1525299 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  P5647_RS08010 (P5647_08010) gerR 1525445..1526026 (+) 582 WP_003232210.1 sporulation specific transcriptional regulator GerR -
  P5647_RS08015 (P5647_08015) ylbP 1526083..1526565 (-) 483 WP_003244940.1 N-acetyltransferase -
  P5647_RS08020 (P5647_08020) panEA 1526725..1527621 (+) 897 WP_003232206.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=733426 P5647_RS07985 WP_003245451.1 1522081..1523106(+) (sepM) [Bacillus subtilis strain DSM 1090]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=733426 P5647_RS07985 WP_003245451.1 1522081..1523106(+) (sepM) [Bacillus subtilis strain DSM 1090]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAATCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402