Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   P5647_RS07955 Genome accession   NZ_CP120622
Coordinates   1517736..1518185 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain DSM 1090     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512736..1523185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5647_RS07915 (P5647_07915) ctaE 1512753..1513376 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  P5647_RS07920 (P5647_07920) ctaF 1513379..1513711 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  P5647_RS07925 (P5647_07925) ctaG 1513738..1514631 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  P5647_RS07930 (P5647_07930) ylbA 1514663..1515025 (-) 363 WP_003232238.1 YugN family protein -
  P5647_RS07935 (P5647_07935) ylbB 1515165..1515611 (+) 447 WP_003221362.1 CBS domain-containing protein -
  P5647_RS07940 (P5647_07940) ylbC 1515695..1516735 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  P5647_RS07945 (P5647_07945) ylbD 1516967..1517365 (+) 399 WP_003232233.1 YlbD family protein -
  P5647_RS07950 (P5647_07950) ylbE 1517381..1517620 (+) 240 WP_003232231.1 YlbE-like family protein -
  P5647_RS07955 (P5647_07955) ylbF 1517736..1518185 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  P5647_RS07960 (P5647_07960) ylbG 1518240..1518512 (+) 273 WP_009967171.1 YlbG family protein -
  P5647_RS07965 (P5647_07965) rsmD 1518835..1519389 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P5647_RS07970 (P5647_07970) coaD 1519394..1519879 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  P5647_RS07975 (P5647_07975) spoVV 1519890..1521116 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  P5647_RS07980 (P5647_07980) ylbK 1521297..1522079 (+) 783 WP_003232221.1 patatin family protein -
  P5647_RS07985 (P5647_07985) sepM 1522081..1523106 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=733425 P5647_RS07955 WP_003221370.1 1517736..1518185(+) (ylbF) [Bacillus subtilis strain DSM 1090]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=733425 P5647_RS07955 WP_003221370.1 1517736..1518185(+) (ylbF) [Bacillus subtilis strain DSM 1090]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1