Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   P5657_RS03040 Genome accession   NZ_CP120621
Coordinates   579264..579860 (-) Length   198 a.a.
NCBI ID   WP_003225425.1    Uniprot ID   G4NT17
Organism   Bacillus subtilis strain DSM 13019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 574264..584860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS03030 (P5657_03030) bofA 578692..578955 (-) 264 WP_003225421.1 sigma-K factor-processing regulator BofA -
  P5657_RS03035 (P5657_03035) yaaL 579022..579246 (-) 225 WP_003242387.1 YaaL family protein -
  P5657_RS03040 (P5657_03040) recR 579264..579860 (-) 597 WP_003225425.1 recombination protein RecR Machinery gene
  P5657_RS03045 (P5657_03045) ebfC 579875..580198 (-) 324 WP_003225427.1 YbaB/EbfC family nucleoid-associated protein -
  P5657_RS03050 (P5657_03050) dnaX 580222..581913 (-) 1692 WP_134992063.1 DNA polymerase III subunit gamma/tau -
  P5657_RS03060 (P5657_03060) tadA 582390..582875 (-) 486 WP_106611087.1 tRNA adenosine(34) deaminase TadA -
  P5657_RS03065 (P5657_03065) yaaI 582961..583506 (+) 546 WP_003226786.1 isochorismatase family cysteine hydrolase -
  P5657_RS03070 (P5657_03070) sleL 583576..584859 (+) 1284 WP_134992062.1 glycoside hydrolase family 18 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21974.53 Da        Isoelectric Point: 5.3504

>NTDB_id=733233 P5657_RS03040 WP_003225425.1 579264..579860(-) (recR) [Bacillus subtilis strain DSM 13019]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=733233 P5657_RS03040 WP_003225425.1 579264..579860(-) (recR) [Bacillus subtilis strain DSM 13019]
ATGCAATATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGATGTAGTATTAGATTTTGCGAAAGCATTAGTAAATGCGAAACGCAACC
TGACATATTGTTCAGTTTGCGGGCATATTACAGATCAGGACCCTTGCTATATATGTGAAGATACGCGCAGGGATAAGTCT
GTTATCTGTGTTGTGCAAGACCCTAAGGATGTTATCGCTATGGAGAAAATGAAGGAATACAACGGACAGTATCACGTTCT
TCACGGCGCTATTTCTCCAATGGACGGCATCGGACCGGAGGATATTAAAATACCAGAATTGTTAAAACGATTACAGGATG
ATCAAGTGACAGAAGTGATCCTCGCGACAAACCCTAATATAGAAGGGGAAGCAACAGCGATGTATATATCAAGGCTCCTC
AAGCCGTCTGGTATTAAGCTCTCCCGTATTGCCCACGGACTGCCCGTCGGCGGTGATTTGGAATATGCTGATGAGGTCAC
TCTTTCTAAAGCACTTGAAGGAAGACGTGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

100

100

1
  recR Streptococcus pneumoniae R6

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.041

98.99

0.515