Detailed information    

insolico Bioinformatically predicted

Overview

Name   MMJJ_RS05685   Type   Machinery gene
Locus tag   N6C89_RS05645 Genome accession   NZ_CP104873
Coordinates   1122725..1122946 (-) Length   73 a.a.
NCBI ID   WP_262289581.1    Uniprot ID   -
Organism   Methanococcus aeolicus strain PL15/HP     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1117725..1127946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6C89_RS05625 (N6C89_05625) - 1118779..1119834 (+) 1056 WP_262289578.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -
  N6C89_RS05630 (N6C89_05630) - 1119861..1120229 (+) 369 WP_262289579.1 dihydroneopterin aldolase family protein -
  N6C89_RS05635 (N6C89_05635) - 1120196..1120711 (-) 516 WP_011973361.1 hypothetical protein -
  N6C89_RS05640 (N6C89_05640) - 1120864..1122714 (-) 1851 WP_262289580.1 DUF6541 family protein -
  N6C89_RS05645 (N6C89_05645) MMJJ_RS05685 1122725..1122946 (-) 222 WP_262289581.1 class III signal peptide-containing protein Machinery gene
  N6C89_RS05650 (N6C89_05650) - 1123286..1124971 (-) 1686 WP_011973365.1 S-layer protein -
  N6C89_RS05655 (N6C89_05655) - 1125255..1125779 (-) 525 WP_262289582.1 acylphosphatase -
  N6C89_RS05660 (N6C89_05660) - 1125899..1127677 (-) 1779 WP_011973367.1 ribosome biogenesis/translation initiation ATPase RLI -

Sequence

Protein


Download         Length: 73 a.a.        Molecular weight: 7777.16 Da        Isoelectric Point: 10.2315

>NTDB_id=733054 N6C89_RS05645 WP_262289581.1 1122725..1122946(-) (MMJJ_RS05685) [Methanococcus aeolicus strain PL15/HP]
MKLLKKLTSKKGQVSMEIGILVAAAVAVAAIAAYYYIWNVKESHPENAGISANKAIVILGNKSVQYANSISNL

Nucleotide


Download         Length: 222 bp        

>NTDB_id=733054 N6C89_RS05645 WP_262289581.1 1122725..1122946(-) (MMJJ_RS05685) [Methanococcus aeolicus strain PL15/HP]
ATGAAATTGTTAAAAAAATTAACCTCCAAAAAAGGACAGGTTTCAATGGAAATAGGTATCTTAGTGGCAGCAGCAGTTGC
AGTTGCAGCTATTGCAGCATACTATTATATATGGAATGTCAAAGAATCTCATCCAGAAAATGCAGGAATATCGGCAAATA
AAGCCATAGTAATTTTAGGGAATAAATCTGTTCAATATGCTAATTCCATAAGTAATCTATAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

78.261

63.014

0.493
  epdE Methanococcus maripaludis strain DSM 2067

75

54.795

0.411