Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   SAP2_RS04475 Genome accession   NZ_AP019698
Coordinates   943510..944226 (-) Length   238 a.a.
NCBI ID   WP_142019518.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain P2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 938510..949226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAP2_RS04455 (SAP2_09000) - 939481..939705 (+) 225 WP_002509111.1 sulfurtransferase TusA family protein -
  SAP2_RS04460 (SAP2_09010) - 939956..940915 (+) 960 WP_142019516.1 LacI family DNA-binding transcriptional regulator -
  SAP2_RS04465 (SAP2_09020) - 940998..942482 (+) 1485 WP_142019517.1 sucrose-6-phosphate hydrolase -
  SAP2_RS04470 (SAP2_09030) - 942479..943441 (+) 963 WP_112369522.1 carbohydrate kinase family protein -
  SAP2_RS04475 (SAP2_09040) agrA 943510..944226 (-) 717 WP_142019518.1 quorum-sensing response regulator AgrA Regulator
  SAP2_RS13160 (SAP2_09050) agrC 944239..945537 (-) 1299 WP_002509116.1 quorum-sensing sensor histidine kinase AgrC -
  SAP2_RS04485 (SAP2_09060) agrD 945564..945701 (-) 138 WP_002509117.1 cyclic lactone autoinducer peptide AgrD -
  SAP2_RS04490 (SAP2_09070) - 945698..946273 (-) 576 WP_002509118.1 accessory gene regulator AgrB -
  SAP2_RS04495 (SAP2_09080) - 947016..947801 (-) 786 WP_002509119.1 carbon-nitrogen family hydrolase -
  SAP2_RS04500 (SAP2_09090) - 948058..948687 (-) 630 WP_021459259.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27799.58 Da        Isoelectric Point: 4.8504

>NTDB_id=73304 SAP2_RS04475 WP_142019518.1 943510..944226(-) (agrA) [Staphylococcus arlettae strain P2]
MKIFICEDDVRQRDSMVSIIDNYIMIEEKPMEIALATGDPYAILEETKNQQGVGCYFLDIQLDADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKIAAMDFIFKDDPEELKSRIIDCIETSETRLNLLSKDSSVETIELKRGSNSVYVRYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDERFFRCHNSFVVNRHNIESIDSKERIVYFNNQEYCYASVRNIKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=73304 SAP2_RS04475 WP_142019518.1 943510..944226(-) (agrA) [Staphylococcus arlettae strain P2]
TTGAAAATTTTCATATGCGAAGATGATGTGAGGCAGCGAGACAGTATGGTGTCTATTATTGATAACTATATTATGATTGA
AGAAAAGCCAATGGAAATTGCATTGGCCACTGGAGATCCTTACGCAATTTTAGAGGAAACCAAAAATCAGCAGGGCGTTG
GTTGTTACTTTTTAGATATCCAGCTTGATGCAGATATCAATGGCATTAAATTAGCAAGTGAGATTCGAAAACATGACCCA
GTGGGCAACATCATTTTTGTTACAAGCCATAGTGAACTTACATATTTAACATTTGTTTATAAAATAGCTGCAATGGATTT
TATCTTTAAAGATGATCCTGAGGAATTAAAATCTCGCATTATCGATTGTATAGAAACGTCTGAAACACGCTTAAATCTTT
TATCGAAAGACAGTAGCGTTGAAACTATAGAACTTAAACGCGGTAGTAATTCTGTATATGTACGTTACGATGATATTATG
TTTTTTGAATCTTCATCAAAATCACACCGTTTAATTGCGCATTTAGACAATCGACAAATTGAATTTTATGGTAACTTAAA
AGAACTCAGTCAATTAGATGAGCGGTTTTTCAGGTGTCACAATAGCTTTGTGGTTAATCGACATAATATTGAATCCATTG
ATTCTAAAGAACGGATAGTTTATTTCAATAATCAAGAATATTGCTATGCATCAGTTCGAAATATAAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

85.294

100

0.853

Multiple sequence alignment