Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA8_RS25485 Genome accession   NZ_CP104869
Coordinates   5487218..5487775 (+) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5482218..5492775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA8_RS25465 (PALA8_05070) pilR 5483494..5484831 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  PALA8_RS25470 (PALA8_05071) thiO 5484877..5485971 (-) 1095 WP_003134931.1 glycine oxidase ThiO -
  PALA8_RS25475 (PALA8_05072) - 5486106..5486615 (+) 510 WP_003134932.1 GspH/FimT family pseudopilin -
  PALA8_RS25480 (PALA8_05073) - 5486721..5487227 (+) 507 WP_003134935.1 GspH/FimT family pseudopilin -
  PALA8_RS25485 (PALA8_05074) pilV 5487218..5487775 (+) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  PALA8_RS25490 (PALA8_05075) pilW 5487772..5488596 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PALA8_RS25495 (PALA8_05076) pilX 5488593..5489180 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PALA8_RS25500 (PALA8_05077) pilY1 5489192..5492677 (+) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=733006 PALA8_RS25485 WP_003110422.1 5487218..5487775(+) (pilV) [Pseudomonas aeruginosa strain PALA8]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=733006 PALA8_RS25485 WP_003110422.1 5487218..5487775(+) (pilV) [Pseudomonas aeruginosa strain PALA8]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984