Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   P5622_RS16660 Genome accession   NZ_CP120598
Coordinates   3206956..3207981 (-) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain PRO115     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3201956..3212981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS16625 (P5622_16625) - 3202441..3203337 (-) 897 WP_003232206.1 2-dehydropantoate 2-reductase -
  P5622_RS16630 (P5622_16630) ylbP 3203497..3203979 (+) 483 WP_003244940.1 N-acetyltransferase -
  P5622_RS16635 (P5622_16635) gerR 3204036..3204617 (-) 582 WP_003232210.1 sporulation specific transcriptional regulator GerR -
  P5622_RS16640 (P5622_16640) rpmF 3204763..3204942 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  P5622_RS16645 (P5622_16645) ylbN 3204964..3205482 (-) 519 WP_003232214.1 DUF177 domain-containing protein -
  P5622_RS16650 (P5622_16650) - 3205510..3205695 (+) 186 WP_003232215.1 hypothetical protein -
  P5622_RS16655 (P5622_16655) ylbM 3205692..3206939 (+) 1248 WP_003244707.1 nucleotidyltransferase -
  P5622_RS16660 (P5622_16660) sepM 3206956..3207981 (-) 1026 WP_003245451.1 protease DdcP Regulator
  P5622_RS16665 (P5622_16665) ylbK 3207983..3208765 (-) 783 WP_003232221.1 patatin family protein -
  P5622_RS16670 (P5622_16670) spoVV 3208946..3210172 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  P5622_RS16675 (P5622_16675) coaD 3210183..3210668 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  P5622_RS16680 (P5622_16680) rsmD 3210673..3211227 (-) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P5622_RS16685 (P5622_16685) ylbG 3211550..3211822 (-) 273 WP_009967171.1 YlbG family protein -
  P5622_RS16690 (P5622_16690) ylbF 3211877..3212326 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  P5622_RS16695 (P5622_16695) ylbE 3212442..3212681 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=732869 P5622_RS16660 WP_003245451.1 3206956..3207981(-) (sepM) [Bacillus subtilis strain PRO115]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=732869 P5622_RS16660 WP_003245451.1 3206956..3207981(-) (sepM) [Bacillus subtilis strain PRO115]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAATCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402