Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   P5622_RS16690 Genome accession   NZ_CP120598
Coordinates   3211877..3212326 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain PRO115     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3206877..3217326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS16660 (P5622_16660) sepM 3206956..3207981 (-) 1026 WP_003245451.1 protease DdcP Regulator
  P5622_RS16665 (P5622_16665) ylbK 3207983..3208765 (-) 783 WP_003232221.1 patatin family protein -
  P5622_RS16670 (P5622_16670) spoVV 3208946..3210172 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  P5622_RS16675 (P5622_16675) coaD 3210183..3210668 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  P5622_RS16680 (P5622_16680) rsmD 3210673..3211227 (-) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P5622_RS16685 (P5622_16685) ylbG 3211550..3211822 (-) 273 WP_009967171.1 YlbG family protein -
  P5622_RS16690 (P5622_16690) ylbF 3211877..3212326 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  P5622_RS16695 (P5622_16695) ylbE 3212442..3212681 (-) 240 WP_003232231.1 YlbE-like family protein -
  P5622_RS16700 (P5622_16700) ylbD 3212697..3213095 (-) 399 WP_003232233.1 YlbD family protein -
  P5622_RS16705 (P5622_16705) ylbC 3213327..3214367 (-) 1041 WP_003245434.1 CAP domain-containing protein -
  P5622_RS16710 (P5622_16710) ylbB 3214451..3214897 (-) 447 WP_003221362.1 CBS domain-containing protein -
  P5622_RS16715 (P5622_16715) ylbA 3215037..3215399 (+) 363 WP_003232238.1 YugN family protein -
  P5622_RS16720 (P5622_16720) ctaG 3215431..3216324 (-) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  P5622_RS16725 (P5622_16725) ctaF 3216351..3216682 (-) 332 Protein_3248 cytochrome c oxidase subunit IVB -
  P5622_RS16730 (P5622_16730) ctaE 3216685..3217308 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=732870 P5622_RS16690 WP_003221370.1 3211877..3212326(-) (ylbF) [Bacillus subtilis strain PRO115]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=732870 P5622_RS16690 WP_003221370.1 3211877..3212326(-) (ylbF) [Bacillus subtilis strain PRO115]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1