Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   N6G78_RS17740 Genome accession   NZ_CP104855
Coordinates   3433893..3435050 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain TY-1     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3428893..3440050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS17710 (N6G78_17710) yvyF 3429146..3429565 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  N6G78_RS17715 (N6G78_17715) comFC 3429639..3430361 (-) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  N6G78_RS17720 (N6G78_17720) comFB 3430325..3430621 (-) 297 WP_015483764.1 late competence protein ComFB -
  N6G78_RS17725 (N6G78_17725) comFA 3430681..3432072 (-) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  N6G78_RS17730 (N6G78_17730) fakBA 3432178..3433023 (-) 846 WP_003227986.1 DegV family protein -
  N6G78_RS17735 (N6G78_17735) degU 3433121..3433810 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  N6G78_RS17740 (N6G78_17740) degS 3433893..3435050 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  N6G78_RS17745 (N6G78_17745) yvyE 3435267..3435920 (+) 654 WP_003227979.1 YigZ family protein -
  N6G78_RS17750 (N6G78_17750) tagV 3435920..3437095 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  N6G78_RS17755 (N6G78_17755) tagO 3437168..3438244 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  N6G78_RS17760 (N6G78_17760) tuaH 3438389..3439582 (-) 1194 WP_080030751.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=732732 N6G78_RS17740 WP_003227983.1 3433893..3435050(-) (degS) [Bacillus subtilis strain TY-1]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=732732 N6G78_RS17740 WP_003227983.1 3433893..3435050(-) (degS) [Bacillus subtilis strain TY-1]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATTGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAGATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1