Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   N6G78_RS17735 Genome accession   NZ_CP104855
Coordinates   3433121..3433810 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain TY-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3428121..3438810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS17700 (N6G78_17700) flgN 3428301..3428783 (-) 483 WP_014481048.1 flagellar protein FlgN -
  N6G78_RS17705 (N6G78_17705) flgM 3428799..3429065 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  N6G78_RS17710 (N6G78_17710) yvyF 3429146..3429565 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  N6G78_RS17715 (N6G78_17715) comFC 3429639..3430361 (-) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  N6G78_RS17720 (N6G78_17720) comFB 3430325..3430621 (-) 297 WP_015483764.1 late competence protein ComFB -
  N6G78_RS17725 (N6G78_17725) comFA 3430681..3432072 (-) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  N6G78_RS17730 (N6G78_17730) fakBA 3432178..3433023 (-) 846 WP_003227986.1 DegV family protein -
  N6G78_RS17735 (N6G78_17735) degU 3433121..3433810 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  N6G78_RS17740 (N6G78_17740) degS 3433893..3435050 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  N6G78_RS17745 (N6G78_17745) yvyE 3435267..3435920 (+) 654 WP_003227979.1 YigZ family protein -
  N6G78_RS17750 (N6G78_17750) tagV 3435920..3437095 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  N6G78_RS17755 (N6G78_17755) tagO 3437168..3438244 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=732731 N6G78_RS17735 WP_003219701.1 3433121..3433810(-) (degU) [Bacillus subtilis strain TY-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=732731 N6G78_RS17735 WP_003219701.1 3433121..3433810(-) (degU) [Bacillus subtilis strain TY-1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1