Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   N6G78_RS06230 Genome accession   NZ_CP104855
Coordinates   1198613..1199764 (+) Length   383 a.a.
NCBI ID   WP_015483087.1    Uniprot ID   -
Organism   Bacillus subtilis strain TY-1     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context

Location: 1193613..1204764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS06195 (N6G78_06195) yjbB 1194288..1195505 (+) 1218 WP_080030656.1 MFS transporter -
  N6G78_RS06200 (N6G78_06200) yjbC 1195669..1196244 (+) 576 WP_015383352.1 GNAT family N-acetyltransferase -
  N6G78_RS06205 (N6G78_06205) spx 1196425..1196820 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  N6G78_RS06210 (N6G78_06210) yjbE 1196863..1197519 (-) 657 WP_015483086.1 TerC family protein -
  N6G78_RS06215 (N6G78_06215) - 1197689..1197829 (+) 141 WP_119122854.1 hypothetical protein -
  N6G78_RS06220 (N6G78_06220) mecA 1197796..1198452 (+) 657 WP_015383354.1 adaptor protein MecA Regulator
  N6G78_RS06225 (N6G78_06225) - 1198455..1198569 (-) 115 Protein_1163 hypothetical protein -
  N6G78_RS06230 (N6G78_06230) coiA 1198613..1199764 (+) 1152 WP_015483087.1 competence protein CoiA Machinery gene
  N6G78_RS06235 (N6G78_06235) pepF 1199994..1201823 (+) 1830 WP_003245178.1 oligoendopeptidase F -
  N6G78_RS06240 (N6G78_06240) - 1201861..1202028 (-) 168 WP_003244944.1 hypothetical protein -
  N6G78_RS06245 (N6G78_06245) spxH 1202343..1203242 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  N6G78_RS06250 (N6G78_06250) bhbI 1203239..1203637 (-) 399 WP_015383357.1 thiol management oxidoreductase component -
  N6G78_RS06255 (N6G78_06255) cwlQ 1203892..1204617 (-) 726 WP_015383358.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 44816.98 Da        Isoelectric Point: 9.8770

>NTDB_id=732690 N6G78_RS06230 WP_015483087.1 1198613..1199764(+) (coiA) [Bacillus subtilis strain TY-1]
MFSAVTEDGQMFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCATIAPNVFQKLTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGVDDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKEINRLRLLFYEKRQTPFSFLPTEVFVPVSKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNK
NIALRFECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPASGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=732690 N6G78_RS06230 WP_015483087.1 1198613..1199764(+) (coiA) [Bacillus subtilis strain TY-1]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCTCCATAGATATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGTTGTATGTATGGCTGAAA
ACGCAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACCATCAACCAAAGACCGGACGTCATGGCAAGGATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCACTATCGCACCAAATGTCTTTCAGAAGCTGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTTAG
CCACATCATACCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGTAGACGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCACAT
CGGTTTAACTCAAAGGAAATAAATCGCCTTAGGCTGCTGTTTTATGAGAAACGGCAGACGCCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGTAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGGTAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTTTGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGCAAGTGGCATACACTCAATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

97.319

97.389

0.948