Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   P5628_RS09305 Genome accession   NZ_CP120577
Coordinates   1771090..1771521 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain PRO53     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1766090..1776521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS09285 (P5628_09285) spoVS 1766652..1766912 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  P5628_RS09290 (P5628_09290) tdh 1767177..1768220 (+) 1044 WP_070548987.1 L-threonine 3-dehydrogenase -
  P5628_RS09295 (P5628_09295) kbl 1768233..1769411 (+) 1179 WP_014479819.1 glycine C-acetyltransferase -
  P5628_RS09300 (P5628_09300) miaB 1769559..1771088 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  P5628_RS09305 (P5628_09305) ymcA 1771090..1771521 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  P5628_RS09310 (P5628_09310) cotE 1771783..1772328 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  P5628_RS09315 (P5628_09315) hexA 1772461..1775037 (+) 2577 WP_151870238.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=732688 P5628_RS09305 WP_003231834.1 1771090..1771521(+) (ymcA) [Bacillus subtilis strain PRO53]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=732688 P5628_RS09305 WP_003231834.1 1771090..1771521(+) (ymcA) [Bacillus subtilis strain PRO53]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAACTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTTCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1