Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FLY91_RS10710 Genome accession   NZ_AP024560
Coordinates   2222484..2223221 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain NIPH17_0020     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2217484..2228221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLY91_RS10680 yfiL 2217642..2218007 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  FLY91_RS10685 aroF 2218217..2219287 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FLY91_RS10690 tyrA 2219298..2220419 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FLY91_RS10695 pheA 2220462..2221622 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  FLY91_RS10700 pheL 2221721..2221768 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  FLY91_RS10705 raiA 2221872..2222213 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FLY91_RS10710 comL 2222484..2223221 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FLY91_RS10715 rluD 2223356..2224336 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FLY91_RS10720 yfiH 2224333..2225064 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  FLY91_RS10725 clpC 2225194..2227767 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=73249 FLY91_RS10710 WP_000197686.1 2222484..2223221(-) (comL) [Escherichia coli strain NIPH17_0020]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=73249 FLY91_RS10710 WP_000197686.1 2222484..2223221(-) (comL) [Escherichia coli strain NIPH17_0020]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376