Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   P5707_RS07380 Genome accession   NZ_CP120567
Coordinates   1540808..1541545 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A0 34/86     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1535808..1546545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5707_RS07350 (P5707_07350) yfiL 1535958..1536323 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  P5707_RS07355 (P5707_07355) aroF 1536533..1537603 (+) 1071 WP_001168025.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  P5707_RS07360 (P5707_07360) tyrA 1537614..1538735 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  P5707_RS07365 (P5707_07365) pheA 1538778..1539938 (-) 1161 WP_000200125.1 bifunctional chorismate mutase/prephenate dehydratase -
  P5707_RS07370 (P5707_07370) pheL 1540037..1540084 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  P5707_RS07375 (P5707_07375) raiA 1540188..1540538 (-) 351 WP_000178457.1 ribosome-associated translation inhibitor RaiA -
  P5707_RS07380 (P5707_07380) comL 1540808..1541545 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  P5707_RS07385 (P5707_07385) rluD 1541680..1542660 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  P5707_RS07390 (P5707_07390) yfiH 1542657..1543388 (+) 732 WP_000040144.1 purine nucleoside phosphorylase YfiH -
  P5707_RS07395 (P5707_07395) clpC 1543518..1546091 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=732489 P5707_RS07380 WP_000197686.1 1540808..1541545(-) (comL) [Escherichia coli strain A0 34/86]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=732489 P5707_RS07380 WP_000197686.1 1540808..1541545(-) (comL) [Escherichia coli strain A0 34/86]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376