Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   N6G94_RS01395 Genome accession   NZ_CP104768
Coordinates   290138..291406 (-) Length   422 a.a.
NCBI ID   WP_323715057.1    Uniprot ID   -
Organism   Pediococcus inopinatus strain BC1     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 285138..296406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G94_RS01390 (N6G94_01390) - 288401..290116 (-) 1716 WP_323715056.1 proline--tRNA ligase -
  N6G94_RS01395 (N6G94_01395) eeP 290138..291406 (-) 1269 WP_323715057.1 RIP metalloprotease RseP Regulator
  N6G94_RS01400 (N6G94_01400) - 291424..292209 (-) 786 WP_323715058.1 phosphatidate cytidylyltransferase -
  N6G94_RS01405 (N6G94_01405) - 292223..293017 (-) 795 WP_323715059.1 isoprenyl transferase -
  N6G94_RS01410 (N6G94_01410) - 293202..294491 (+) 1290 WP_320532055.1 ISL3 family transposase -
  N6G94_RS01415 (N6G94_01415) frr 294627..295190 (-) 564 WP_323715060.1 ribosome recycling factor -
  N6G94_RS01420 (N6G94_01420) pyrH 295192..295914 (-) 723 WP_057772032.1 UMP kinase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46402.04 Da        Isoelectric Point: 9.4051

>NTDB_id=732204 N6G94_RS01395 WP_323715057.1 290138..291406(-) (eeP) [Pediococcus inopinatus strain BC1]
MIQTIITFIIVFGILVIVHEFGHFYFAKKSGILVREFSIGMGPKIYAYSKNATTYTIRILPVGGYVRMAGLEDADEELKP
GMPVSLITGDNGKVETINTSHDTTLLNGIPVEITGSDLENELWIEGYENGDEETLKRYEVDHDASIIEADGTKVRIAPKD
VQFQSAKLWQRILTNFAGPMNNFILAIVVFALVGILQGQVPTNSNQITVIQDSVAAKSGLKSQDRIISVNDKSTKDWSDL
QDAISSRPGKKTKMTIKRNSKKITLQITPKSVKQNGTKTGQIGIESTMTKSITARIAYGFTETWKLTTMIFALLGHMITH
GVSVNDFGGPVAIYAQTSAAAKLGFTSVLTMLAYLSLNLGIVNLIPIPALDGGKILLNFIEGIRRKPLKPETEGIITLIG
FGLLMLLMILVTWNDIQRYFLK

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=732204 N6G94_RS01395 WP_323715057.1 290138..291406(-) (eeP) [Pediococcus inopinatus strain BC1]
TTGATACAGACGATTATTACATTCATAATTGTATTTGGAATTCTGGTTATTGTTCATGAATTTGGTCATTTTTATTTTGC
TAAAAAATCTGGGATCTTAGTCCGTGAATTTTCAATCGGAATGGGACCTAAAATTTATGCATATTCTAAAAACGCAACAA
CGTATACAATTCGAATTTTGCCGGTAGGTGGTTATGTCCGTATGGCGGGACTGGAAGATGCAGATGAAGAATTAAAACCT
GGAATGCCAGTCAGTTTAATCACTGGTGATAATGGCAAAGTTGAAACAATCAACACAAGTCATGACACAACGCTTCTCAA
TGGTATTCCAGTTGAAATAACCGGAAGTGATTTAGAAAACGAGCTTTGGATTGAAGGCTATGAAAATGGCGATGAGGAGA
CCCTCAAACGTTATGAAGTTGATCATGACGCGTCAATTATTGAAGCTGATGGCACAAAGGTAAGAATTGCCCCAAAAGAT
GTTCAATTTCAGTCAGCCAAATTATGGCAACGAATTTTGACTAATTTTGCAGGGCCGATGAATAATTTTATTCTGGCGAT
TGTGGTGTTTGCGCTTGTTGGTATTTTGCAAGGACAGGTTCCTACTAATTCTAATCAAATTACTGTTATTCAGGATTCCG
TTGCTGCAAAATCTGGTTTAAAATCGCAGGATCGGATCATTTCCGTGAATGATAAAAGCACAAAAGATTGGTCAGATTTA
CAGGACGCTATTTCTAGCCGCCCTGGTAAAAAAACTAAAATGACCATCAAACGAAATTCTAAGAAAATCACTCTGCAGAT
TACGCCCAAATCGGTTAAGCAAAATGGGACAAAGACCGGACAAATCGGGATTGAAAGTACCATGACCAAGAGTATCACTG
CCAGAATTGCTTATGGATTTACGGAAACCTGGAAGTTAACGACCATGATTTTCGCACTCCTAGGTCATATGATTACACAT
GGAGTAAGTGTGAATGATTTTGGAGGCCCAGTCGCTATTTATGCGCAAACTTCTGCTGCAGCTAAATTAGGTTTTACTTC
TGTGTTAACAATGTTAGCTTATTTATCATTGAACTTAGGAATTGTTAATTTAATCCCAATTCCGGCGTTGGATGGTGGTA
AAATTTTGCTTAATTTCATCGAAGGGATCAGACGGAAACCACTAAAACCAGAGACGGAAGGAATCATTACTCTGATTGGG
TTTGGACTCCTGATGCTTTTAATGATTCTTGTAACCTGGAATGACATTCAACGCTATTTCTTAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(7-407)

PDZ domain (PDZ_6)

(208-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

47.897

100

0.486
  eeP Streptococcus thermophilus LMD-9

47.664

100

0.483