NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	N5P13_RS01665	Genome accession	NZ_CP104736
Coordinates	352313..353173 (-)	Length	286 a.a.
NCBI ID	WP_004920478.1	Uniprot ID	A0A7G2SJN3
Organism	Acinetobacter baylyi strain JAT2091
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 347313..358173

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N5P13_RS01640 (N5P13_01640)	-	348207..349514 (+)	1308	WP_004920495.1	tetratricopeptide repeat protein	-
N5P13_RS01645 (N5P13_01645)	-	349593..349919 (+)	327	WP_004920494.1	pyrimidine/purine nucleoside phosphorylase	-
N5P13_RS01650 (N5P13_01650)	rlmB	350019..350765 (+)	747	WP_004920490.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
N5P13_RS01655 (N5P13_01655)	-	350806..351723 (+)	918	WP_004920488.1	DMT family transporter	-
N5P13_RS01660 (N5P13_01660)	coaE	351720..352307 (-)	588	WP_004920482.1	dephospho-CoA kinase	-
N5P13_RS01665 (N5P13_01665)	pilD	352313..353173 (-)	861	WP_004920478.1	prepilin peptidase	Machinery gene
N5P13_RS01670 (N5P13_01670)	pilC	353173..354399 (-)	1227	WP_004920476.1	type II secretion system F family protein	Machinery gene
N5P13_RS01675 (N5P13_01675)	pilB	354428..356140 (-)	1713	WP_004920473.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N5P13_RS01680 (N5P13_01680)	tpiA	356405..357202 (+)	798	WP_004920470.1	triose-phosphate isomerase	-
N5P13_RS01685 (N5P13_01685)	secG	357212..357541 (+)	330	WP_004920467.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32322.80 Da Isoelectric Point: 7.9704

                                >NTDB_id=731726 N5P13_RS01665 WP_004920478.1 352313..353173(-) (pilD) [Acinetobacter baylyi strain JAT2091]

MSDFIRYFSENLTALYCLVGILSLCIGSFLNVVIFRTPKMMEQEWKQECQMILHPDQPLIESEKLTLSYPASTCPHCHTP

IRWYQNIPLISWLFLRGKCQSCKASISSRYPLVELLTMLCSLLVVVVFGATLHMLFGLVLTWILIALTFIDFDTQLLPDR

FTLTLAGLGLAVNSFTIYVSPTQAIWGYIVGFLCLWIVYYIFKLITKKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSC

VGAIIGIILLRKRQENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=731726 N5P13_RS01665 WP_004920478.1 352313..353173(-) (pilD) [Acinetobacter baylyi strain JAT2091]

ATGTCTGACTTCATTCGTTATTTTTCTGAAAATTTAACTGCTTTATATTGTCTTGTAGGTATTTTAAGTCTATGTATAGG

AAGCTTTCTCAATGTTGTGATTTTTCGCACACCCAAAATGATGGAACAAGAATGGAAACAAGAATGTCAGATGATATTAC

ATCCAGATCAGCCACTCATCGAAAGTGAAAAGTTAACGCTCAGTTACCCTGCTTCAACTTGTCCACACTGTCATACTCCT

ATCCGCTGGTATCAAAATATTCCATTAATCAGTTGGTTATTTCTACGTGGTAAATGTCAGTCATGCAAAGCTTCCATCAG

TAGTCGTTATCCGCTGGTTGAGTTACTGACCATGCTTTGTTCGCTGCTGGTGGTTGTGGTATTTGGTGCGACACTACACA

TGCTTTTCGGTTTAGTGCTGACCTGGATATTGATTGCGCTGACCTTTATTGACTTTGATACCCAGCTTCTACCTGATCGT

TTTACCCTGACACTTGCAGGATTAGGGTTAGCTGTAAATAGCTTCACAATCTATGTTTCCCCCACTCAAGCGATTTGGGG

TTATATTGTGGGCTTCCTTTGCCTCTGGATTGTGTATTACATTTTTAAGCTGATTACCAAAAAAGAAGGCATGGGCTATG

GCGATTTTAAATTACTCGCGGCTCTAGGAGCATGGATGGGACCCATGATGCTGCCATTGATCGTGCTCTTGTCATCCTGC

GTCGGCGCCATTATTGGTATCATTTTGCTACGTAAGCGTCAGGAAAATCAGCCTTTTGCATTTGGTCCCTATATCGCGAT

TGCAGGTTGGATTGCATTTTTGTGGGGCGATCAGATTATGAAAGTCTACCTGGGAGGCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7G2SJN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	78.322	100	0.783
pilD	Acinetobacter baumannii D1279779	77.273	100	0.773
pilD	Vibrio cholerae strain A1552	55.351	94.755	0.524
pilD	Vibrio campbellii strain DS40M4	53.008	93.007	0.493
pilD	Neisseria gonorrhoeae MS11	46.241	93.007	0.43

Detailed information NTG0731726