Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   N5P16_RS03980 Genome accession   NZ_CP104734
Coordinates   877547..878188 (-) Length   213 a.a.
NCBI ID   WP_011182736.1    Uniprot ID   A0A7G2SHL4
Organism   Acinetobacter baylyi strain JAT2044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 872547..883188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS03945 (N5P16_03945) mlaE 872913..873689 (+) 777 WP_004924030.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  N5P16_RS03950 (N5P16_03950) - 873689..874360 (+) 672 WP_004924032.1 outer membrane lipid asymmetry maintenance protein MlaD -
  N5P16_RS03955 (N5P16_03955) - 874379..875011 (+) 633 WP_004924035.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  N5P16_RS03960 (N5P16_03960) - 875025..875318 (+) 294 WP_004924038.1 STAS domain-containing protein -
  N5P16_RS03965 (N5P16_03965) - 875370..876383 (-) 1014 WP_004924041.1 magnesium and cobalt transport protein CorA -
  N5P16_RS03970 (N5P16_03970) - 876542..877126 (+) 585 WP_004924043.1 TIGR00730 family Rossman fold protein -
  N5P16_RS03975 (N5P16_03975) - 877145..877543 (+) 399 WP_171056891.1 NUDIX hydrolase -
  N5P16_RS03980 (N5P16_03980) comF 877547..878188 (-) 642 WP_011182736.1 ComF family protein Machinery gene
  N5P16_RS03985 (N5P16_03985) recG 878175..880220 (-) 2046 WP_004924056.1 ATP-dependent DNA helicase RecG -
  N5P16_RS03990 (N5P16_03990) - 880244..881059 (+) 816 WP_004924059.1 SDR family oxidoreductase -
  N5P16_RS03995 (N5P16_03995) - 881191..882180 (+) 990 WP_011182733.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24808.11 Da        Isoelectric Point: 8.3020

>NTDB_id=731698 N5P16_RS03980 WP_011182736.1 877547..878188(-) (comF) [Acinetobacter baylyi strain JAT2044]
MLMSNLLATTLQWLKKECVPCPLCELSPQQKQQILCKDCWQELPWFKDYVTRHELNILAACEYRYPIDQIVQQFKYHDRL
HYQSLLSSLLLTLPLPRVQAIVPMPISEKRLIERGYNQSLLLAQSIAKHLNVPVWQPVERLAQHSQKGLSRLERISQIDE
QFIVRQPVKERYRRVMIVDDVVTTGSSIHALTHVLQNLGCVHIYPVCIAAVFD

Nucleotide


Download         Length: 642 bp        

>NTDB_id=731698 N5P16_RS03980 WP_011182736.1 877547..878188(-) (comF) [Acinetobacter baylyi strain JAT2044]
ATGCTTATGTCTAATTTGCTTGCAACCACACTTCAATGGCTTAAAAAAGAGTGCGTCCCCTGCCCATTATGTGAATTAAG
TCCGCAGCAAAAACAGCAGATACTCTGTAAGGATTGCTGGCAGGAACTGCCGTGGTTTAAAGATTACGTTACACGACATG
AGTTAAATATTCTGGCAGCCTGCGAGTATCGCTATCCCATCGACCAGATTGTGCAGCAATTTAAATATCATGATCGTCTG
CATTATCAAAGTCTGCTGAGCAGTCTTTTGCTCACATTGCCATTGCCCCGGGTTCAGGCCATTGTACCTATGCCAATTTC
TGAAAAACGTCTGATTGAACGGGGCTATAATCAATCACTCTTACTGGCACAGAGCATAGCCAAACACCTGAATGTACCCG
TTTGGCAACCTGTAGAACGTTTAGCACAACATTCGCAAAAAGGACTTTCGCGATTAGAGCGGATTAGTCAGATCGATGAG
CAGTTTATTGTGCGACAGCCTGTTAAAGAGCGCTATCGACGCGTGATGATTGTGGATGATGTTGTCACGACAGGCAGTTC
AATCCATGCCCTGACACATGTATTACAAAACCTTGGCTGTGTGCATATTTATCCGGTGTGTATTGCAGCAGTTTTTGATT
AG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G2SHL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.5

93.897

0.531
  comF Acinetobacter baumannii D1279779

56

93.897

0.526