Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   N5P16_RS00790 Genome accession   NZ_CP104734
Coordinates   173110..174525 (+) Length   471 a.a.
NCBI ID   WP_004920725.1    Uniprot ID   Q6FFD3
Organism   Acinetobacter baylyi strain JAT2044     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 168110..179525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS00770 (N5P16_00770) thrC 168353..169492 (+) 1140 WP_004920712.1 threonine synthase -
  N5P16_RS00775 (N5P16_00775) pbpG 169586..170644 (-) 1059 WP_004920717.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  N5P16_RS00780 (N5P16_00780) - 170858..171493 (+) 636 WP_004920720.1 response regulator transcription factor GacA -
  N5P16_RS00785 (N5P16_00785) pilS 171515..173092 (+) 1578 WP_004920722.1 sensor histidine kinase Regulator
  N5P16_RS00790 (N5P16_00790) pilR 173110..174525 (+) 1416 WP_004920725.1 sigma-54-dependent transcriptional regulator Regulator
  N5P16_RS00795 (N5P16_00795) - 174527..175708 (-) 1182 WP_004920728.1 S41 family peptidase -
  N5P16_RS00800 (N5P16_00800) gpmI 175719..177266 (-) 1548 WP_004920731.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  N5P16_RS00805 (N5P16_00805) lptG 177388..178458 (-) 1071 WP_004920734.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53023.70 Da        Isoelectric Point: 6.3221

>NTDB_id=731679 N5P16_RS00790 WP_004920725.1 173110..174525(+) (pilR) [Acinetobacter baylyi strain JAT2044]
MTEQQPRVLLIDDEEDLCTLMQISLSRLGVQTDCAYNLQRAKQLLQQQHYDACLTDLNLPDGHGLDFVQYVTERFPYLPI
AVITAYGNMGIAIAALKAGAFDFVSKPINQQHLSQLIQTALHSSQTAPDNEQDTLEHRLLIGQSAPIEQLRIALRKIARS
QAPVFITGESGTGKEVVANLVHRLSNRNEGPFIALNCGAIPSELMESELFGHKKGSFTGATQDKQGLLLSAHGGSLFLDE
IAELPLTMQVKLLRAVQEKKIRPIGSDREIDVDFRVISASHQNLELLVQQGKFRQDLFFRIHVMDIQLPPLRERGQDILL
LAKHFIQHVCHEWDLPLKHLSPAAEHYLLHYDFPGNVRELRNMMERAITLSDGASIDLQQLNSSLLRQTTIPELDLTPIS
NTVSIAPTSQQNLEFPHEGLEQYLEKVEKDMLLNALNSTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDDG

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=731679 N5P16_RS00790 WP_004920725.1 173110..174525(+) (pilR) [Acinetobacter baylyi strain JAT2044]
ATGACCGAACAACAACCACGTGTTTTACTCATTGATGATGAAGAAGACCTTTGTACATTGATGCAAATCAGTCTTTCACG
TCTCGGCGTCCAGACAGATTGTGCCTACAACCTACAACGTGCCAAACAATTGTTACAACAACAACATTATGATGCCTGCC
TAACCGATCTCAACCTACCCGATGGACATGGACTTGATTTTGTTCAGTACGTTACAGAACGCTTTCCTTACTTACCCATT
GCCGTGATTACGGCGTATGGCAATATGGGCATTGCAATTGCAGCGTTAAAAGCCGGTGCTTTTGACTTTGTGAGCAAACC
CATCAATCAACAGCATCTTAGTCAACTGATTCAAACTGCACTGCATAGTAGCCAAACGGCACCAGACAATGAACAAGACA
CGCTTGAGCATCGTTTATTGATTGGTCAATCTGCACCCATTGAACAACTACGTATAGCACTTAGAAAAATTGCACGTTCG
CAGGCACCCGTATTTATTACAGGTGAGTCTGGAACAGGTAAGGAAGTGGTTGCCAATCTGGTACATCGCTTAAGCAATCG
CAATGAAGGGCCGTTTATTGCACTAAACTGTGGTGCAATTCCGTCAGAACTCATGGAGAGTGAGTTATTTGGCCATAAGA
AAGGCAGCTTCACAGGTGCCACACAAGATAAACAGGGATTACTTTTATCGGCACATGGAGGAAGTCTATTTCTGGATGAA
ATTGCAGAACTTCCTCTCACGATGCAAGTTAAATTACTACGCGCTGTTCAAGAAAAGAAAATCCGTCCAATTGGTTCAGA
TCGTGAAATTGATGTCGATTTTCGTGTGATCAGTGCCAGCCATCAGAATCTGGAACTTTTAGTCCAGCAAGGCAAATTTC
GTCAGGATTTATTCTTTCGAATTCATGTCATGGATATTCAGCTTCCTCCACTACGTGAGCGTGGACAAGATATTTTACTG
TTAGCCAAGCATTTTATTCAGCATGTTTGTCATGAATGGGACCTGCCTTTAAAGCATTTGAGCCCTGCGGCTGAACATTA
TCTACTACATTATGACTTTCCAGGAAATGTTCGGGAATTACGCAATATGATGGAACGTGCCATTACCTTAAGTGATGGAG
CATCAATAGACCTTCAGCAATTAAACAGCTCTCTACTACGCCAAACCACTATCCCAGAATTAGATTTAACACCGATTTCG
AATACAGTATCAATAGCACCAACATCTCAGCAAAATTTAGAATTTCCACATGAAGGACTTGAACAATATTTAGAAAAAGT
TGAAAAAGATATGCTGCTTAATGCGTTAAATAGTACACACTGGAATCGTACTTTAGCCGCAAAAAAATTAGGAATGAGTT
TTCGCTCTCTTCGCTATCGTCTGAAAAAATTTGGGCTTGATACTGATGATGGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-307)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6FFD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

72.979

99.788

0.728
  pilR Pseudomonas aeruginosa PAK

49.024

97.877

0.48