Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   N5069_RS23265 Genome accession   NZ_CP104728
Coordinates   4668085..4668654 (-) Length   189 a.a.
NCBI ID   WP_008177953.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain HJ.T1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4663085..4673654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5069_RS23245 (N5069_23245) rplI 4664214..4664660 (-) 447 WP_036121876.1 50S ribosomal protein L9 -
  N5069_RS23250 (N5069_23250) - 4664660..4666630 (-) 1971 WP_261612981.1 DHH family phosphoesterase -
  N5069_RS23255 (N5069_23255) - 4666644..4667585 (-) 942 WP_036121884.1 YybS family protein -
  N5069_RS23260 (N5069_23260) rpsR 4667810..4668046 (-) 237 WP_004233359.1 30S ribosomal protein S18 -
  N5069_RS23265 (N5069_23265) ssbA 4668085..4668654 (-) 570 WP_008177953.1 single-stranded DNA-binding protein Machinery gene
  N5069_RS23270 (N5069_23270) rpsF 4668701..4668988 (-) 288 WP_008177955.1 30S ribosomal protein S6 -
  N5069_RS23275 (N5069_23275) - 4669167..4669751 (+) 585 WP_036147833.1 DUF3267 domain-containing protein -
  N5069_RS23280 (N5069_23280) - 4669793..4670833 (-) 1041 WP_261612982.1 acyl-CoA dehydrogenase -
  N5069_RS23285 (N5069_23285) ychF 4670916..4672016 (-) 1101 WP_008177960.1 redox-regulated ATPase YchF -
  N5069_RS23290 (N5069_23290) - 4672114..4672314 (-) 201 WP_008177961.1 DUF951 domain-containing protein -
  N5069_RS23295 (N5069_23295) - 4672316..4673188 (-) 873 WP_036121904.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20589.58 Da        Isoelectric Point: 4.7719

>NTDB_id=731650 N5069_RS23265 WP_008177953.1 4668085..4668654(-) (ssbA) [Lysinibacillus fusiformis strain HJ.T1]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRAFSNQQGEREADFINCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGSGAPAPQYGGGQTYGNNQPSYGGGQPQQQFGGAMPGQGSYGGDAYQQNQPPM
NQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=731650 N5069_RS23265 WP_008177953.1 4668085..4668654(-) (ssbA) [Lysinibacillus fusiformis strain HJ.T1]
ATGATAAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGTTATACACCAAATGGAATTGCGTCTAC
AAGATTTACAGTTGCTGTGAATCGTGCATTCTCAAATCAACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTTGCAT
GGCGAAAACAGGCTGAAAACCTAGCGAACTTCATGCGAAAAGGAAGTTTAATTGGGGTAGAAGGTCGTATCCAAACAGGC
AGTTATGAAGGACAAGACGGTAAGCGAGTATATACAACAGACGTTGTGGCGGATAGCGTACAGTTTTTAGAACCACGTAA
TGGTAGCGGAGCTCCTGCTCCTCAATACGGTGGTGGACAAACTTACGGTAATAACCAACCGTCATATGGCGGTGGTCAAC
CACAACAACAGTTTGGTGGCGCTATGCCAGGACAGGGTTCCTATGGCGGCGATGCTTATCAGCAAAATCAACCACCTATG
AATCAGCCAAACTATACACGTGTAGATGAGGATCCATTTGCTAATAGCAAAGGGCCGATAGAAGTATCTGAGGATGATCT
TCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.497

100

0.545
  ssb Latilactobacillus sakei subsp. sakei 23K

48.677

100

0.487