Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   N5980_RS02310 Genome accession   NZ_CP104651
Coordinates   488432..489067 (-) Length   211 a.a.
NCBI ID   WP_175966151.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain 2021CK-01005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 483432..494067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5980_RS02275 (N5980_02275) mlaE 483496..484275 (+) 780 WP_004786970.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  N5980_RS02280 (N5980_02280) - 484275..484952 (+) 678 WP_175966159.1 outer membrane lipid asymmetry maintenance protein MlaD -
  N5980_RS02285 (N5980_02285) - 484971..485606 (+) 636 WP_004786965.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  N5980_RS02290 (N5980_02290) - 485619..485909 (+) 291 WP_175966157.1 STAS domain-containing protein -
  N5980_RS02295 (N5980_02295) - 486244..487257 (-) 1014 WP_004786961.1 CorA family divalent cation transporter -
  N5980_RS02300 (N5980_02300) - 487410..488000 (+) 591 WP_175966155.1 TIGR00730 family Rossman fold protein -
  N5980_RS02305 (N5980_02305) - 488029..488430 (+) 402 WP_175966153.1 NUDIX hydrolase -
  N5980_RS02310 (N5980_02310) comF 488432..489067 (-) 636 WP_175966151.1 ComF family protein Machinery gene
  N5980_RS02315 (N5980_02315) recG 489054..491099 (-) 2046 WP_175966150.1 ATP-dependent DNA helicase RecG -
  N5980_RS02320 (N5980_02320) - 491133..491945 (+) 813 WP_175966148.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24410.64 Da        Isoelectric Point: 9.4181

>NTDB_id=731242 N5980_RS02310 WP_175966151.1 488432..489067(-) (comF) [Acinetobacter variabilis strain 2021CK-01005]
MPMFKLLQQGKLWLNRLQPCQLCQTDYQNLHSVCQDCWQQLPWAHQTIQRQEMQFQVACDYAYPMDRLIQLFKYEQKLHL
EPLLAGALLALKFPKVSAVVPMPISTERLVERGYNQSLLLAKHVAKHLQVPVWQPIERLKQHSQKGLSRLERIEDIEAQF
RVTTSSKVRYRKVLIIDDVVTTGSSIRALSQQLEKLGCQQIYAACLAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=731242 N5980_RS02310 WP_175966151.1 488432..489067(-) (comF) [Acinetobacter variabilis strain 2021CK-01005]
ATGCCTATGTTTAAGCTTTTACAACAGGGTAAACTCTGGCTGAATCGTTTACAGCCTTGTCAGCTGTGCCAGACAGATTA
TCAAAACCTGCATTCTGTCTGTCAGGATTGCTGGCAACAGTTACCTTGGGCACATCAGACCATTCAGCGTCAGGAAATGC
AGTTTCAGGTGGCGTGTGACTATGCCTACCCGATGGATCGCCTGATTCAATTATTTAAATATGAGCAAAAGCTGCATCTG
GAACCATTATTGGCAGGTGCATTACTGGCTTTAAAATTTCCTAAAGTCAGTGCAGTGGTTCCTATGCCGATTTCAACCGA
ACGGCTGGTCGAACGTGGCTATAATCAATCCCTATTACTGGCCAAGCATGTTGCCAAACACTTACAAGTTCCCGTCTGGC
AGCCCATTGAACGACTCAAGCAACATTCACAAAAAGGCTTAAGCCGTCTGGAACGTATCGAAGACATTGAAGCCCAATTC
AGGGTCACTACCTCTTCAAAAGTTCGTTATCGTAAGGTTTTAATTATTGATGATGTGGTTACGACTGGCAGCTCGATTCG
AGCTTTAAGCCAGCAACTGGAAAAACTGGGCTGCCAGCAGATTTATGCCGCTTGTCTGGCAGGAGCCAAACTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.353

98.104

0.602
  comF Acinetobacter baumannii D1279779

60.87

98.104

0.597