Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   N5980_RS02030 Genome accession   NZ_CP104651
Coordinates   435514..435984 (+) Length   156 a.a.
NCBI ID   WP_180004773.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain 2021CK-01005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430514..440984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5980_RS02020 (N5980_02020) - 431111..431830 (+) 720 WP_261635309.1 pilus assembly PilX family protein -
  N5980_RS02025 (N5980_02025) - 431841..435500 (+) 3660 WP_261635310.1 pilus assembly protein PilY -
  N5980_RS02030 (N5980_02030) comE 435514..435984 (+) 471 WP_180004773.1 type IV pilin protein Machinery gene
  N5980_RS02035 (N5980_02035) - 435985..436452 (+) 468 WP_261635311.1 type IV pilin protein -
  N5980_RS02040 (N5980_02040) rpsP 436595..436852 (+) 258 WP_004281198.1 30S ribosomal protein S16 -
  N5980_RS02045 (N5980_02045) rimM 436883..437431 (+) 549 WP_004787070.1 ribosome maturation factor RimM -
  N5980_RS02050 (N5980_02050) trmD 437474..438214 (+) 741 WP_261635312.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  N5980_RS02055 (N5980_02055) rplS 438421..438792 (+) 372 WP_004787066.1 50S ribosomal protein L19 -
  N5980_RS02060 (N5980_02060) - 438857..439837 (-) 981 WP_261635532.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17073.36 Da        Isoelectric Point: 9.0291

>NTDB_id=731241 N5980_RS02030 WP_180004773.1 435514..435984(+) (comE) [Acinetobacter variabilis strain 2021CK-01005]
MIKDKFSGFTLIELMVVVVIVAIFAAIAIPSYQEYVRRAHASQAQQEMMHLSSLLERHKARNFSYRNFTPSAVVIPEGAT
GSAIKYNIEVVSGDNSNPLLNASTATGRSWVIRGLSTDTQNYSFLLTSTGIRCKNKAAENVSFTSCGNTNSGSETW

Nucleotide


Download         Length: 471 bp        

>NTDB_id=731241 N5980_RS02030 WP_180004773.1 435514..435984(+) (comE) [Acinetobacter variabilis strain 2021CK-01005]
ATGATTAAAGACAAATTCTCTGGGTTTACGCTTATAGAATTGATGGTGGTTGTGGTGATTGTTGCAATATTTGCAGCAAT
CGCTATTCCCTCTTATCAAGAATATGTACGACGTGCACACGCAAGTCAGGCCCAACAAGAGATGATGCATCTTTCTAGCT
TGTTAGAAAGACATAAGGCTAGAAATTTTTCTTATAGGAATTTTACTCCTTCTGCTGTGGTTATTCCAGAAGGTGCGACT
GGAAGTGCCATCAAATATAATATAGAAGTTGTTAGCGGAGATAATAGTAACCCTCTGCTAAATGCATCTACTGCAACTGG
TCGTAGTTGGGTTATTAGGGGATTGAGTACGGATACTCAAAACTATTCATTTTTACTAACAAGTACAGGCATTCGTTGTA
AGAACAAAGCAGCAGAAAACGTTAGTTTTACAAGCTGTGGAAATACTAACTCTGGTAGTGAGACATGGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(30-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

48.214

100

0.519
  pilY2 Acinetobacter baumannii D1279779

45.161

99.359

0.449