Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   N5980_RS01130 Genome accession   NZ_CP104651
Coordinates   243023..244177 (-) Length   384 a.a.
NCBI ID   WP_175966349.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain 2021CK-01005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 238023..249177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5980_RS01105 (N5980_01105) - 238450..238995 (-) 546 WP_175966357.1 glutathione peroxidase -
  N5980_RS01110 (N5980_01110) - 239169..239714 (-) 546 WP_104426931.1 glutathione peroxidase -
  N5980_RS01115 (N5980_01115) - 239906..240817 (+) 912 WP_175966355.1 DMT family transporter -
  N5980_RS01120 (N5980_01120) - 241216..241785 (-) 570 WP_175966353.1 Sua5/YciO/YrdC/YwlC family protein -
  N5980_RS01125 (N5980_01125) dprA 241826..242965 (-) 1140 WP_175966351.1 DNA-processing protein DprA Machinery gene
  N5980_RS01130 (N5980_01130) tsaP 243023..244177 (-) 1155 WP_175966349.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  N5980_RS01135 (N5980_01135) def 244298..244828 (+) 531 WP_175966347.1 peptide deformylase -
  N5980_RS01140 (N5980_01140) - 244921..245331 (+) 411 WP_104426935.1 DUF2946 family protein -
  N5980_RS01145 (N5980_01145) - 245403..247400 (+) 1998 WP_175966345.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41950.11 Da        Isoelectric Point: 9.0542

>NTDB_id=731228 N5980_RS01130 WP_175966349.1 243023..244177(-) (tsaP) [Acinetobacter variabilis strain 2021CK-01005]
MKKVLKGMPFSSALGLKNQMLALAVCVGVSMGTMYSAEAAPARNVNPPALKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYIGSTSLQPQVRVESLNNTIPVIPLAHIQQWLE
RYTIVAADSVQGTPYILGTADQRVLAGKGQKVYARGNGLVVGQRYAVYREADPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENTVAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGNVMVFKTFDQLSYAYVLESELPIKVGANIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=731228 N5980_RS01130 WP_175966349.1 243023..244177(-) (tsaP) [Acinetobacter variabilis strain 2021CK-01005]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTCTAGTGCCTTGGGGTTAAAAAATCAAATGCTCGCACTGGCAGTTTGTGT
CGGAGTGAGTATGGGGACAATGTATTCAGCCGAGGCAGCTCCTGCCCGCAACGTCAATCCACCTGCTTTAAAAGCCAGTG
CGCCTAATGTCTACGTGGTCAAAAAAGGCGATACATTGTGGGATATTTCAAAACGTTTCTTAAAAAATCCGGTGCGTTGG
CCAGAAATCTGGGCCAGTAACAAGCACGTGAAAAATCCACATTGGATTTTTCCAGGTGACCGCCTGTTGATGTGTGACTA
TCAAGGTCGTCCAATTATCGGTAAAGACGAAGGTGATGGCTGTGAAGGTATCATCAGTCGTTATATCGGTAGTACTTCAT
TACAACCACAGGTTCGCGTTGAATCTTTAAATAATACGATTCCAGTGATTCCATTAGCGCATATCCAGCAATGGTTGGAA
CGCTATACCATAGTGGCAGCTGATTCAGTTCAAGGTACGCCTTACATTCTCGGCACTGCAGACCAGCGCGTACTGGCCGG
TAAAGGCCAGAAGGTCTATGCACGCGGCAATGGTCTGGTGGTTGGCCAGCGTTATGCGGTGTATCGTGAGGCAGACCCTT
ATGTCTTTACCGATGCCAATGGCAAGAAATACACGGCTGCTCTAGAGCTGCAACAGGTTGCTTCCGGAATCGCAGTACGT
GGCGAAGGTGATGTCACCACGCTGGAATTGACAGATAGCTACAATGCCGAAGTGCGTCGTGGTGACCGTGTATTACCTGA
ATACGATCCGATGTTGCCTACCCTGTTCTATCCAGTGAATGCAGAAAATACGGTTGCTGGTGGTCAGATTGTGCGTGTAC
TGGGTTCAATTGGTACAGCAGCACGTCATAGTGTCGTGACGATTGACCGTGGTACGGCACATGGGGTTCAGACTGGTCAT
GTCTTTAGCGTAAACCAGAAAGGTGAAGTCGTGACTGATCCGAAAACCAAAGAGCGCGTACAGCTTCCAGGTGAGCGCAT
TGGCAATGTGATGGTCTTTAAAACTTTTGACCAGCTGAGCTATGCTTATGTGCTGGAAAGTGAGTTACCTATCAAGGTGG
GTGCCAATATTCAAGCGCCATTGCTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.273

100

0.674