Detailed information NTG0073115

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GZN30_RS05120
• Genome accession: NZ_AP019657
• Coordinates: 1162714..1164138 (-)
• Length: 474 a.a.
• NCBI ID: WP_075650147.1
• Uniprot ID: -
• Organism: Vibrio ponticus strain DSM 16217
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1157714..1169138

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZN30_RS05095	-	1158532..1159008 (+)	477	WP_075650155.1	response regulator	-
GZN30_RS05100	-	1159250..1160461 (+)	1212	WP_075650186.1	HD-GYP domain-containing protein	-
GZN30_RS05105	cdd	1160545..1161432 (-)	888	WP_075650153.1	cytidine deaminase	-
GZN30_RS05110	-	1161629..1162306 (-)	678	WP_075650151.1	LrgB family protein	-
GZN30_RS05115	-	1162306..1162671 (-)	366	WP_075650149.1	CidA/LrgA family protein	-
GZN30_RS05120	sbcB	1162714..1164138 (-)	1425	WP_075650147.1	exodeoxyribonuclease I	Machinery gene
GZN30_RS05125	-	1164357..1164575 (+)	219	WP_075650145.1	DUF6500 family protein	-
GZN30_RS05130	-	1164633..1165796 (-)	1164	WP_075650143.1	HD domain-containing phosphohydrolase	-
GZN30_RS05135	-	1166109..1166321 (-)	213	WP_075650139.1	cold-shock protein	-
GZN30_RS05140	-	1166696..1168078 (-)	1383	WP_075650137.1	L-cystine transporter	-
GZN30_RS05145	-	1168275..1168955 (-)	681	WP_075650135.1	NAD(P)H-binding protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54597.80 Da
• Isoelectric Point: 4.9372

>NTDB_id=73115 GZN30_RS05120 WP_075650147.1 1162714..1164138(-) (sbcB) [Vibrio ponticus strain DSM 16217]
MQQEHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQLAASKGLPEP
EFIAQIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPDGVEWPENEEGFI
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELIDIVNMTPLMHVSGMLGKECHY
TSWIVPVAWHPTNQNAVITVDLAKDPQAILDLDADTLRERLYTKHSDLAEDELPVPVKLVHINKCPILAPAKTLTAENAE
KIGINREQCLENLQRLRQHPEIREKLIAVFGVDREFENSADVDSQLYDNFFSPSDRAAMDIIRQTPAEQLADLDISFSDP
RIEPLLFRYRARNFPWTLSELEQQKWMNHSRDYFQSRIDDYMINLENLVHEHESDTKKIALLKSVYQYVEKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=73115 GZN30_RS05120 WP_075650147.1 1162714..1164138(-) (sbcB) [Vibrio ponticus strain DSM 16217]
ATGCAACAAGAGCACCAACCTACGTTTTTCTTCTTCGACTACGAAACGTGGGGAACCAGTCCCGCTAAAGATCGTCCGAG
CCAATTTGCAGGCGTTCGCACGGATATGGATTTCAATATCATTGGTGAGCCTCTTGTTATCTATTGCCAACCACCATCGG
ACTATTTGCCTTCTCCAGAAGCGGCGCTCATTACTGGTATTACGCCTCAATTAGCGGCGAGTAAAGGTCTACCAGAGCCC
GAATTTATCGCCCAAATTCATCAGCAACTCGCCACGCCAAATACCACTAGCCTTGGCTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGCTACACTTGCTACCGTAACTTTATCGATCCTTATGCCTGGAGTTGGCAAAACGGTAATTCACGCTGGG
ATCTATTAGATGTGATGCGCGCCTGCCATGCACTTCGCCCCGATGGCGTTGAATGGCCAGAAAATGAAGAAGGTTTTATC
AGCTTTAAACTCGAACACCTCTCTGTTGCAAACGGCATTGAACACAGTAATGCCCATGATGCGATGGCTGACGTAATTGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCGGCGCAACCAAAACTGTTCGATTACTTCCTCAGTATGCGCCATAAACGCA
AGCTCAATGAGCTGATCGATATCGTCAATATGACCCCGCTGATGCATGTATCAGGCATGTTGGGTAAAGAGTGTCATTAC
ACCAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAACCAAAATGCGGTAATCACCGTTGATCTTGCAAAAGACCCGCA
AGCCATCCTCGACCTCGATGCTGACACGCTGCGCGAACGTCTTTACACCAAACATAGCGATTTAGCCGAAGATGAGTTGC
CAGTCCCGGTAAAATTGGTGCACATTAATAAGTGCCCTATCCTCGCTCCGGCAAAAACATTGACTGCGGAGAATGCAGAG
AAGATCGGCATTAACCGTGAACAATGCTTGGAAAATTTACAACGACTTCGCCAACATCCAGAAATTCGCGAAAAGTTGAT
TGCCGTGTTTGGCGTTGACCGTGAGTTTGAAAACAGCGCTGACGTTGATAGCCAACTTTACGACAATTTCTTCTCACCAT
CGGACCGTGCCGCGATGGACATTATTCGCCAAACACCAGCGGAGCAGTTAGCCGATCTCGATATTAGTTTCAGTGACCCT
CGCATCGAGCCACTGCTATTTAGATATCGCGCGCGTAACTTCCCTTGGACTTTGAGTGAGCTAGAGCAACAAAAGTGGAT
GAACCACTCTCGTGACTACTTCCAAAGTCGCATAGACGACTACATGATAAATCTTGAAAACTTAGTTCACGAACATGAGA
GTGATACAAAGAAGATTGCACTATTAAAATCTGTGTACCAGTACGTCGAGAAACTTGTCTCTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.07	99.789	0.789