Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GZN30_RS00670 Genome accession   NZ_AP019657
Coordinates   136674..137288 (-) Length   204 a.a.
NCBI ID   WP_075649378.1    Uniprot ID   -
Organism   Vibrio ponticus strain DSM 16217     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 131674..142288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZN30_RS00660 aceF 132958..134859 (+) 1902 WP_075649380.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  GZN30_RS00665 lpdA 135127..136557 (+) 1431 WP_075649379.1 dihydrolipoyl dehydrogenase -
  GZN30_RS00670 opaR 136674..137288 (-) 615 WP_075649378.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  GZN30_RS00675 hpt 137681..138211 (+) 531 WP_075649377.1 hypoxanthine phosphoribosyltransferase -
  GZN30_RS00680 can 138286..138954 (-) 669 WP_075649376.1 carbonate dehydratase -
  GZN30_RS00685 - 139200..140870 (+) 1671 WP_171972062.1 SulP family inorganic anion transporter -
  GZN30_RS00690 - 141070..141996 (+) 927 WP_075649374.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23576.80 Da        Isoelectric Point: 5.3365

>NTDB_id=73108 GZN30_RS00670 WP_075649378.1 136674..137288(-) (opaR) [Vibrio ponticus strain DSM 16217]
MDSIAKRPRTRLSPKKRKQQLMDISLEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDLHAKENLENITSSMLDLIAQDCDWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVKNMFIKAQQRGEVCDEHDPE
DLATLFHGICYSLFVQANRSREHSELVKLADSYLNMLCIYKTAE

Nucleotide


Download         Length: 615 bp        

>NTDB_id=73108 GZN30_RS00670 WP_075649378.1 136674..137288(-) (opaR) [Vibrio ponticus strain DSM 16217]
ATGGACTCAATAGCAAAAAGACCTCGAACTCGTCTTTCGCCCAAAAAGCGTAAACAACAACTGATGGATATCTCACTCGA
GGTATTTGCTCGCCGTGGTATCGGTCGCGGTGGTCATGCTGATATTGCTGAAATTGCACAAGTTTCAGTCGCGACTGTCT
TCAACTACTTCCCGACTCGTGAAGATTTGGTTGATGATGTACTTAACTACGTAGTTCGCCAATTCTCGAACTTCTTATCA
GACAATATCGACCTTGATCTGCACGCAAAAGAAAATTTGGAAAACATCACTAGCTCAATGCTCGACCTTATCGCTCAAGA
TTGCGATTGGTTGAAAGTATGGTTTGAGTGGAGCGCATCGACGCGCGATGAAGTTTGGCCACTGTTTGTCAGTACCAATC
GCACCAACCAACTGTTGGTGAAAAACATGTTTATCAAGGCGCAACAGCGCGGTGAAGTATGTGATGAGCATGATCCAGAA
GATCTCGCAACACTATTCCACGGCATTTGCTACTCACTGTTTGTACAAGCAAATCGTAGTCGTGAGCATAGCGAACTCGT
CAAGCTCGCAGATAGCTATCTAAATATGCTGTGCATCTACAAAACCGCCGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83

98.039

0.814
  hapR Vibrio cholerae C6706

75.377

97.549

0.735
  hapR Vibrio cholerae strain A1552

75.377

97.549

0.735

Multiple sequence alignment