Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K6J80_RS09960 Genome accession   NZ_AP024553
Coordinates   2196234..2197898 (+) Length   554 a.a.
NCBI ID   WP_000879555.1    Uniprot ID   P0C6Q4
Organism   Vibrio cholerae strain IDH-03329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2191234..2202898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J80_RS09940 dnaK 2192301..2194208 (-) 1908 WP_000516147.1 molecular chaperone DnaK -
  K6J80_RS09945 - 2194366..2194479 (+) 114 WP_001889140.1 hypothetical protein -
  K6J80_RS09950 grpE 2194472..2195074 (-) 603 WP_000064038.1 nucleotide exchange factor GrpE -
  K6J80_RS09955 nadK 2195220..2196104 (+) 885 WP_000742830.1 NAD(+) kinase -
  K6J80_RS09960 recN 2196234..2197898 (+) 1665 WP_000879555.1 DNA repair protein RecN Machinery gene
  K6J80_RS09965 bamE 2198057..2198416 (+) 360 WP_001160907.1 outer membrane protein assembly factor BamE -
  K6J80_RS09970 - 2198494..2198799 (-) 306 WP_001918351.1 RnfH family protein -
  K6J80_RS09975 - 2198802..2199236 (-) 435 WP_000815876.1 SRPBCC family protein -
  K6J80_RS09980 smpB 2199420..2199905 (+) 486 WP_000162689.1 SsrA-binding protein SmpB -
  K6J80_RS09990 - 2200507..2201775 (+) 1269 WP_001107728.1 integrase domain-containing protein -
  K6J80_RS09995 - 2201774..2202180 (+) 407 Protein_1942 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 61251.93 Da        Isoelectric Point: 5.5765

>NTDB_id=73089 K6J80_RS09960 WP_000879555.1 2196234..2197898(+) (recN) [Vibrio cholerae strain IDH-03329]
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEQKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVQQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=73089 K6J80_RS09960 WP_000879555.1 2196234..2197898(+) (recN) [Vibrio cholerae strain IDH-03329]
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCACTACAACTCGAATTATCAAAAGGAATGACCACCAT
CACCGGTGAAACTGGTGCTGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGTCTCGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCCGCCTTTCATCTGGATAACAATCTGCTCGCTAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTCTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAACTCAAAACATTGGGGCAACTGCTGATCAATGTGCATGGTCAACACGCACATC
AGCAACTGATGAAACCGGAATATCAGCTCAGCATGCTTGATCAATACGCAGGTCATGCAGACTTGCTCAAAGCCACGCGT
CACGCCTATCAAAATTGGCGTCAAGCGAGCAATCAGCTCAAACAGCTGCGCGAAAATAGCCAACAAAATCAGGCACAATT
ACAACTTTTGGAATACCAAATCAAAGAGCTCAACGAATTGGCTCTCGGTGAGGATGAGTTTGTCGAGCTAGAACAAGAGC
AAAAACGCTTAGCCAATAGCGGCGATCTGGCACTCAACTGCCAACGCGCGATTGAACTGCTCAATGAAGGGGAAGAAGTA
AACGCCTTAGGCCTTTTACAAAGTGTTAGCCATACGCTGATTGATCTGGCTGAAATGGATAGCAAACTGACAGCGCTCCC
TTCAATGGTGGCCGAAGCGCTGATCCAACTTGAAGAGACTTACCATGAACTGCGCAATTACTTGGATTCGATTGATGTCG
ACCCAGAACGCATGGCGTATGTAGAAGAGCGCTACTCCAAAGTCATGTCGCTCGCGCGTAAACATCATGTACTGCCAGAA
GAGCTGTATCAGCATCACCAAGCACTCTTACAGCAAATTGCTCAGCTAGATTGTTCTGATGAGAAAATGTCAGCACTCGC
GAGTGAAGTCGACGTGCTCTACCAAACGTTTGTTGCGGCCGCTGACAAACTGCACAAATCTCGTGTTCGCTATGCCAAAG
AATTGGATAAATTGATTAGCCAAAGCATGCATGAGCTGAGCATGGAAAAAGCGCAATTCAAAATCGAAGTGCAGCAAGAC
AGCGCGCACTCATCGCCATTAGGTTTTGATGCCGTGACTTTCTTAGTCTCGACGAACCCGGGTCAACCGCTGCAACCCAT
CGCCAAAGTGGCCTCTGGTGGTGAACTGTCACGGATGTCATTGGCGATCCAAGTGATTACTGCGCAGAAAGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGGCCAACAGCAGCCGTAGTTGGCAAACTACTGCGCAAATTG
GGCGAGTCGACTCAAGTACTGTGTGTCACCCACTTACCGCAAGTGGCAGGTTGCGGACACCATCAACTGTTTGTCGCCAA
ACAGACCAAAGCAGGCAAAACCGAAACGCAAATGCTCAAACTGGATCAAGAACAGCGCATTGCTGAACTTGCACGCTTGC
TCGGAGGCAGCCAAATTACCGAATCCACGCTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0C6Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

36.945

100

0.375
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365

Multiple sequence alignment