Detailed information NTG0073087

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GZK95_RS06930
• Genome accession: NZ_AP019654
• Coordinates: 1518505..1519929 (-)
• Length: 474 a.a.
• NCBI ID: WP_075713460.1
• Uniprot ID: -
• Organism: Vibrio panuliri strain JCM 19500
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1513505..1524929

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZK95_RS06905	-	1514346..1514819 (+)	474	WP_075709500.1	response regulator	-
GZK95_RS06910	-	1515066..1516274 (+)	1209	WP_075713462.1	HD-GYP domain-containing protein	-
GZK95_RS06915	cdd	1516332..1517219 (-)	888	WP_075709502.1	cytidine deaminase	-
GZK95_RS06920	-	1517419..1518096 (-)	678	WP_075709503.1	CidB/LrgB family autolysis modulator	-
GZK95_RS06925	-	1518096..1518461 (-)	366	WP_075709504.1	CidA/LrgA family protein	-
GZK95_RS06930	sbcB	1518505..1519929 (-)	1425	WP_075713460.1	exodeoxyribonuclease I	Machinery gene
GZK95_RS06935	-	1520298..1521722 (-)	1425	WP_075713458.1	glycoside hydrolase family 1 protein	-
GZK95_RS06940	-	1521960..1522676 (+)	717	WP_075713456.1	GntR family transcriptional regulator	-
GZK95_RS06945	-	1522873..1523085 (-)	213	WP_075709508.1	cold-shock protein	-
GZK95_RS06950	-	1523427..1524104 (-)	678	WP_075715398.1	NAD(P)H-binding protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54725.08 Da
• Isoelectric Point: 4.9379

>NTDB_id=73087 GZK95_RS06930 WP_075713460.1 1518505..1519929(-) (sbcB) [Vibrio panuliri strain JCM 19500]
MQQEQQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQLAASKGLIEP
EFINKIHQELATPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACYALRPEGIEWPENDEGYI
SFKLEHLSVANGIEHANAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELIDIVNMTPLMHVSGMLGRDCHY
TSWIVPVAWHPTNQNAVIVVDLAKDPQAILNLDAEALRERLYTKHSDLAEDELPVPVKLVHINKCPILAPAKTLTAENAA
KIGIDREQCLQNLQLLRQHPEIREKLIGVFSVDREFETEQDVDCQLYSRFFSPADRAGMDIIRQTEPEQLAALDISFSDS
RIEPLLFRYRARNYPWTLNEQEQQRWVNHSRDYFQSRIDDYMLNLENLVHEHESDAKKIALLKSVYQYVEKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=73087 GZK95_RS06930 WP_075713460.1 1518505..1519929(-) (sbcB) [Vibrio panuliri strain JCM 19500]
ATGCAACAAGAGCAGCAACCTACGTTTTTCTTTTTTGACTATGAAACGTGGGGGACAAGCCCAGCGAAAGACCGCCCAAG
CCAGTTCGCTGGTGTACGCACCGATATGGATTTTAATATTATCGGCGAACCTCTTGTTATTTATTGTCAGCCACCATCTG
ATTACCTTCCCTCACCTGAAGCGGCACTCATTACTGGCATTACCCCTCAATTGGCGGCGAGCAAAGGTCTGATCGAGCCT
GAGTTTATCAATAAGATCCATCAGGAACTGGCGACACCAAACACAATCAGCTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTCACTCGCTATACCTGTTATCGCAACTTTATCGACCCATACGCATGGAGTTGGCAAAACGGAAACTCTCGCTGGG
ACTTACTCGATGTCATGCGCGCATGCTATGCACTGCGTCCTGAGGGCATTGAATGGCCGGAAAATGACGAAGGCTATATC
AGTTTTAAACTGGAACACTTATCGGTAGCGAACGGTATTGAGCACGCCAATGCACACGATGCTATGGCTGACGTCATTGC
GACCATTGAAATGGCGAAGAAAGTTAAAGCAGCGCAACCTAAACTGTTTGATTATTTCCTGAGTATGCGCCACAAACGCA
AACTCAACGAGTTAATTGATATTGTCAATATGACTCCGCTGATGCACGTATCAGGTATGTTAGGACGTGACTGCCATTAT
ACGAGCTGGATAGTGCCAGTTGCATGGCATCCGACTAACCAAAATGCCGTTATCGTGGTTGATCTTGCTAAAGATCCACA
AGCCATTCTTAATCTGGACGCAGAAGCACTGCGCGAGCGTCTCTATACCAAGCACTCTGATTTAGCAGAAGATGAGTTGC
CTGTACCAGTTAAACTGGTGCACATCAATAAATGCCCTATTCTTGCGCCAGCCAAAACATTGACCGCGGAAAATGCCGCT
AAAATCGGTATCGATCGCGAGCAATGCTTACAGAATCTTCAGTTGTTACGTCAGCATCCAGAAATTCGCGAAAAACTGAT
TGGGGTGTTCAGTGTCGATCGCGAGTTTGAGACAGAACAGGATGTAGACTGTCAGCTATACAGTCGCTTTTTCTCCCCAG
CGGATCGTGCGGGAATGGACATTATCCGTCAAACAGAGCCTGAGCAACTCGCCGCTCTCGATATCAGCTTTTCTGACTCG
AGAATTGAGCCTTTGCTATTTCGCTACCGAGCGCGCAATTATCCTTGGACACTCAATGAGCAAGAACAGCAACGCTGGGT
AAATCACTCGCGCGACTACTTCCAAAGTCGCATAGACGACTACATGCTAAATCTTGAAAACTTAGTTCACGAACATGAGA
GTGATGCAAAGAAAATTGCACTATTAAAATCTGTGTATCAATACGTCGAGAAGCTTGTCTCTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	80.55	99.789	0.804