Detailed information NTG0073081

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GZK95_RS02440
• Genome accession: NZ_AP019654
• Coordinates: 518248..521631 (-)
• Length: 1127 a.a.
• NCBI ID: WP_075715574.1
• Uniprot ID: -
• Organism: Vibrio panuliri strain JCM 19500
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 513248..526631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZK95_RS02425	-	513734..514759 (-)	1026	WP_075715575.1	ABC transporter permease	-
GZK95_RS02430	-	514762..515748 (-)	987	WP_075709871.1	ABC transporter permease	-
GZK95_RS02435	-	515920..517602 (-)	1683	WP_075709872.1	ABC transporter substrate-binding protein	-
GZK95_RS02440	chiS	518248..521631 (-)	3384	WP_075715574.1	response regulator	Regulator
GZK95_RS02445	rsmC	521890..522912 (-)	1023	WP_075715573.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GZK95_RS02450	-	523092..524177 (-)	1086	WP_075709875.1	AI-2E family transporter	-
GZK95_RS02455	hemL	524605..525900 (-)	1296	WP_075709876.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GZK95_RS02460	erpA	526190..526531 (+)	342	WP_075649336.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1127 a.a.
• Molecular weight: 127153.43 Da
• Isoelectric Point: 6.0835

>NTDB_id=73081 GZK95_RS02440 WP_075715574.1 518248..521631(-) (chiS) [Vibrio panuliri strain JCM 19500]
MFKLYRKQRFKRLQNTLMAAFLALSITPLTVIALFFLHSHSQDLQEQSTSHLVSVRDSKHQQITDYLNARESEVMGFVRS
ELAYASGGRFYGLVNAFQSLGLDIDQAREYAQKRYIQGSGDRIKTSILPESPIFNGTERYRLLHTRYHRSFLELLKRSDF
DDILLVDIHGNVTYSIFKHDYFGTNLVDGKYRDSNLGLAFKKLRDEVSRNQKNNPDYTPVVFSDFMSENGKSYAWIGAPI
IQQGYLHSYAMFRLPNNSLTRLIADNNGLWSMKTLLVGTDNKLRTLSYQQQDVDNNQSIIDTAFKQTSAVGTFTNALGEE
TIAAYSHIQSKGLDWALVVEVPEKEAFARVQQLETLFIFAMLFAIVLVVIASHYLSNFITAPLLKLTWSAEKASAGDLNA
EINTERKDEIGRLAISFERMQRSIREKMQLIKEQNEELESNIKLIQTKNEELQLANKLKDEFLATTSHELRTPLHGMVGI
AEALVSGANGPIRSEHKYQLDIIISSGQRLATLVDDLLDYHKMRYGNLDIDTSAVDLSSATRLVLELSSHLLGGKQIRII
NQVPLEPVWVAADPQRVEQVLYNLVGNAIKYTREGKIVISANIVDAKMRVQVVDTGQGIPADQLEHIFEPLIQAGNDSSR
YRQGAGLGLSISRQLVELMGGSLYVSSQPMVGTTFSFTLPLATEEQIALASHNDSMHFKAPESFEVEESEAANLPENPDG
ELLLVVDDEPVNLRVLDSFLKLSGYRVRTAKDGYEALQSIEEEKPELVLLDVMMPGLSGYQVCEAIREQFDSISLPVIML
TALNQTDDRIRGFNSGANDYLSKPFNKQELAARMRVHLSASQAEKRRLENQQLQDELRQRSAIEASLIETQGRLLEQLES
APEAIICTRADGKVRFANEAAARLFKRSVEQLKRSIAEDLLSPKFIDIKQDHYCGKVDIYIGDTRQHIDGDILRLPDASG
LKSMYIFDHGGGANAARINNLETAIDALSSYAFDGDKAKLQQLKELGGEFTRLADRVAGDQKSKQDLMREVLVDAMTNAL
DYWESSTGHSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLEYILSHCSAMTPQRSKIEELRDK
LQHLLTT

Nucleotide

• Length: 3384 bp

>NTDB_id=73081 GZK95_RS02440 WP_075715574.1 518248..521631(-) (chiS) [Vibrio panuliri strain JCM 19500]
ATGTTTAAGTTGTATCGGAAACAACGCTTTAAGCGTCTACAAAATACTTTAATGGCGGCTTTTTTAGCGCTTAGTATCAC
CCCATTGACTGTCATCGCACTCTTCTTTTTGCACTCTCATAGTCAAGACCTGCAGGAACAAAGTACCTCACACCTCGTTT
CGGTGCGAGATAGTAAACACCAGCAAATCACTGACTACCTCAATGCGCGTGAGTCAGAAGTTATGGGCTTTGTTCGCTCT
GAACTCGCCTATGCAAGCGGTGGGCGTTTCTACGGATTAGTTAACGCCTTTCAGAGTTTGGGGCTCGACATCGATCAAGC
TCGAGAATATGCACAAAAGCGCTATATTCAAGGCTCTGGCGATAGAATCAAAACATCAATATTGCCGGAATCACCGATCT
TTAATGGTACGGAGCGCTATCGATTGCTGCATACCCGCTACCATCGTTCATTTTTGGAACTACTCAAACGCTCTGATTTT
GATGATATTTTGCTAGTCGACATTCATGGCAATGTCACTTATTCCATCTTTAAACATGACTACTTTGGGACAAACTTAGT
TGATGGAAAATATCGAGATAGCAATCTTGGTTTAGCGTTTAAAAAACTACGTGACGAAGTGTCGCGCAATCAGAAAAACA
ACCCAGACTATACACCTGTGGTTTTTTCTGACTTTATGTCTGAAAACGGCAAAAGCTATGCTTGGATTGGTGCTCCTATT
ATTCAGCAAGGCTATCTGCACAGCTACGCCATGTTTCGATTGCCAAACAACAGTCTTACCCGTTTAATTGCCGACAATAA
CGGCCTATGGTCGATGAAAACGCTGTTAGTCGGCACTGACAACAAGCTCAGAACTCTTTCTTACCAGCAGCAAGACGTCG
ATAACAACCAATCCATAATCGATACTGCCTTTAAGCAAACTTCGGCGGTTGGCACCTTTACCAATGCCTTGGGCGAAGAA
ACCATTGCCGCCTATAGTCATATCCAATCTAAAGGCTTGGATTGGGCACTGGTGGTTGAAGTTCCCGAGAAAGAAGCCTT
TGCCCGCGTTCAACAACTAGAAACACTATTTATCTTTGCCATGCTGTTCGCGATAGTGTTGGTGGTGATCGCTTCCCACT
ATCTTTCTAACTTCATTACCGCGCCATTACTTAAATTGACTTGGTCAGCCGAGAAAGCCTCTGCCGGTGACCTAAATGCG
GAAATCAATACCGAGCGTAAAGATGAAATTGGTCGTCTTGCGATTTCTTTTGAGCGTATGCAGCGTTCAATTAGAGAAAA
AATGCAGTTAATTAAAGAGCAGAATGAAGAGCTTGAAAGCAACATCAAACTGATTCAAACCAAAAACGAAGAACTGCAAC
TGGCGAACAAACTCAAAGATGAATTTCTTGCCACTACCTCTCACGAACTACGTACACCACTGCATGGTATGGTAGGTATT
GCCGAAGCCTTAGTTTCTGGTGCCAATGGACCAATCCGTTCAGAGCATAAGTACCAATTAGATATTATTATCAGCAGCGG
CCAACGCTTAGCGACACTGGTCGATGATTTACTCGACTATCACAAAATGCGCTATGGCAACCTGGATATTGATACCAGCG
CAGTCGATTTATCGAGCGCAACCCGCCTTGTTCTCGAACTCTCATCTCATCTACTCGGCGGTAAGCAAATACGTATCATC
AACCAAGTTCCACTTGAACCTGTATGGGTTGCTGCTGATCCGCAACGAGTGGAGCAGGTTCTCTATAATTTGGTTGGTAA
TGCGATTAAGTACACCCGTGAAGGAAAAATTGTCATTTCCGCCAATATTGTCGACGCAAAAATGCGAGTACAAGTGGTCG
ATACGGGCCAAGGAATCCCTGCAGACCAACTCGAACATATTTTCGAACCACTGATTCAAGCAGGTAATGACAGTAGCCGC
TATCGTCAAGGGGCTGGACTTGGGCTCTCTATCAGTCGCCAGCTTGTCGAGTTGATGGGAGGCTCCTTATATGTCAGCAG
TCAACCGATGGTCGGCACAACATTTAGCTTTACCTTACCGCTGGCAACAGAAGAGCAGATCGCACTAGCCAGTCATAATG
ACAGCATGCATTTCAAGGCTCCTGAGAGCTTTGAAGTAGAGGAAAGTGAAGCGGCCAACCTACCTGAAAACCCTGATGGT
GAGTTGCTACTCGTGGTGGATGATGAACCGGTAAACCTGAGAGTGCTGGATAGTTTCTTAAAACTCTCTGGTTATCGAGT
TCGTACCGCTAAAGATGGTTATGAGGCCCTGCAATCCATTGAAGAAGAAAAACCGGAGCTGGTATTACTCGATGTCATGA
TGCCGGGCCTTAGCGGCTATCAAGTGTGTGAAGCGATCCGTGAACAGTTCGATAGCATCTCGCTGCCTGTCATCATGTTA
ACCGCGCTCAATCAAACCGATGACCGCATCCGTGGGTTTAACTCTGGTGCCAATGATTACCTATCGAAACCTTTTAATAA
GCAAGAGCTTGCGGCTAGGATGCGTGTCCATCTCTCAGCAAGCCAAGCTGAAAAACGACGACTGGAAAATCAACAGCTTC
AAGATGAGTTACGCCAACGCTCCGCAATTGAAGCGAGCTTGATTGAGACTCAAGGCCGACTTCTAGAGCAGCTAGAGTCT
GCACCAGAAGCGATTATTTGCACCCGAGCAGATGGCAAAGTTCGTTTTGCTAACGAAGCCGCTGCAAGGTTATTTAAGCG
CTCAGTTGAACAGCTAAAACGCTCGATTGCCGAAGATTTGCTCTCTCCCAAGTTTATCGATATCAAGCAAGATCACTACT
GCGGCAAGGTCGATATCTATATTGGCGATACTCGCCAACATATTGATGGGGATATTTTGCGCTTACCTGATGCCTCTGGC
CTTAAGTCAATGTACATCTTTGATCACGGTGGTGGAGCTAATGCTGCACGTATTAACAATCTCGAGACGGCCATTGACGC
TCTGAGTAGTTATGCCTTTGATGGCGACAAAGCGAAGCTGCAACAACTCAAAGAGCTCGGCGGCGAGTTTACTCGTCTTG
CAGACCGCGTCGCAGGTGATCAAAAGTCCAAACAAGACCTAATGCGCGAAGTGTTGGTTGATGCCATGACCAATGCTCTA
GACTACTGGGAAAGCTCAACCGGCCATAGTAAGTTTACTTTTGCCGAACAAAGTGGCTTATGGCGCGTCTACCTAGACCG
AAGCACTCTGCAAACGCGAACTTTAGACAAATACTTACGTATTGAAACGCTGCCTAAAACCCCTCGCTGGCGCACTGTAC
TCAACTCACTTGAATACATCCTTAGCCACTGCTCAGCGATGACACCACAACGCAGTAAAATAGAAGAGCTTCGAGACAAG
CTTCAGCATCTGCTAACAACTTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (724-834)

• HAMP domain (HAMP) (375-426)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-682)

• PAS fold (PAS) (875-923)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	73.493	100	0.736