Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GZK95_RS02260 Genome accession   NZ_AP019654
Coordinates   470795..471412 (-) Length   205 a.a.
NCBI ID   WP_075709837.1    Uniprot ID   A0A1Q9HCB1
Organism   Vibrio panuliri strain JCM 19500     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 465795..476412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZK95_RS02250 aceF 467066..468979 (+) 1914 WP_075712814.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  GZK95_RS02255 lpdA 469248..470678 (+) 1431 WP_075709836.1 dihydrolipoyl dehydrogenase -
  GZK95_RS02260 opaR 470795..471412 (-) 618 WP_075709837.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  GZK95_RS02265 hpt 471807..472337 (+) 531 WP_075709838.1 hypoxanthine phosphoribosyltransferase -
  GZK95_RS02270 can 472414..473082 (-) 669 WP_075709839.1 carbonate dehydratase -
  GZK95_RS02275 - 473327..474997 (+) 1671 WP_171972081.1 SulP family inorganic anion transporter -
  GZK95_RS02280 - 475201..476127 (+) 927 WP_075709841.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23724.92 Da        Isoelectric Point: 5.8816

>NTDB_id=73080 GZK95_RS02260 WP_075709837.1 470795..471412(-) (opaR) [Vibrio panuliri strain JCM 19500]
MDSIAKRPRTRLSPKKRKQQLMDISLEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDLHAKENLANITSAMLDLIAQDCDWLRVWFEWSASTRDEVWPLFVSTNRTNQLLVKNMFIKAQERGEVCDEHDSE
DLATLFHGICYSLFVQANRSREHSELVKLADSYLNMLCIYKTEHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=73080 GZK95_RS02260 WP_075709837.1 470795..471412(-) (opaR) [Vibrio panuliri strain JCM 19500]
ATGGACTCAATAGCAAAAAGACCTCGTACACGTCTTTCGCCCAAAAAGCGTAAACAGCAACTTATGGACATTTCACTTGA
AGTGTTCGCTCGTCGAGGCATTGGTCGTGGTGGTCACGCAGATATTGCGGAAATCGCTCAGGTTTCTGTCGCGACAGTAT
TCAACTACTTCCCGACTCGTGAAGATTTGGTTGATGATGTGCTGAATTATGTCGTGCGCCAGTTCTCTAACTTCCTATCA
GATAATATTGATCTCGATTTGCATGCAAAAGAGAACTTAGCCAACATAACGAGCGCTATGCTTGATTTGATCGCACAAGA
TTGCGACTGGTTAAGAGTTTGGTTTGAATGGAGTGCGTCTACGCGCGATGAGGTGTGGCCGCTGTTTGTTAGCACAAATC
GCACCAATCAACTGCTGGTAAAAAACATGTTTATCAAGGCACAAGAGCGTGGCGAAGTGTGTGACGAACATGACTCTGAA
GATCTTGCAACGCTGTTCCACGGTATTTGTTACTCACTGTTTGTTCAAGCAAACCGTAGTCGTGAGCATAGCGAACTCGT
CAAGCTCGCAGATAGCTATCTAAATATGCTCTGCATCTACAAGACAGAACATCATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q9HCB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83.824

99.512

0.834
  hapR Vibrio cholerae C6706

75.377

97.073

0.732
  hapR Vibrio cholerae strain A1552

75.377

97.073

0.732

Multiple sequence alignment